RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 NHLH2Q02577 135 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ENDOGQ14249 297 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 ZNF542PQ5EBM4 170 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PLAG1Q6DJT9 500 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 NDUFAF7Q7L592 441 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 OR10D4PQ8NGN7 298 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 BCL2L2Q92843 193 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 RANBP9Q96S59 729 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 GPX7Q96SL4 187 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 VN1R3Q9BXE9 311 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 DTX4Q9Y2E6 619 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 MRPL42Q9Y6G3 142 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 TMEM82A0PJX8 343 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 IQCF5A8MTL0 148 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 RGS13O14921 159 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 CTDNEP1O95476 244 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TYRP1P17643 537 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 GPX4P36969 197 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 DYNLT3P51808 116 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 MFAP4P55083 255 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PMS2P11Q13670 270 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SOWAHCQ53LP3 525 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 C19orf54Q5BKX5 351 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 PPP1R3FQ6ZSY5 799 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 HSD17B13Q7Z5P4 300 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 OR52R1Q8NGF1 315 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 OR6M1Q8NGM8 313 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 ZNF519Q8TB69 540 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 TMEM101Q96IK0 257 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 DMRTA2Q96SC8 542 aa2.54□□□□□ -2
SCN1A-219ENST00000641575 SPAG8Q99932 426 aaPredicted RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 FAM120CQ9NX05 1096 aaKnown RBP2.54□□□□□ -2
SCN1A-219ENST00000641575 A0A1B0GX78 115 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 A0A1W2PQU0 124 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 METTL12A8MUP2 240 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 HIDE1A8MVS5 230 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 FAM106CPP0CH98 169 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 NQO2P16083 231 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 LEPP41159 167 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 NHLH1Q02575 133 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 DEFB109BQ30KR1 87 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SMIM21Q3B7S5 101 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 FAM109BQ6ICB4 259 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 PHF13Q86YI8 300 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 TMED6Q8WW62 240 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 DLX4Q92988 240 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 SLC35C1Q96A29 364 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 NEIL1Q96FI4 390 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 POM121L2Q96KW2 1035 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 HAPLN2Q9GZV7 340 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 MED9Q9NWA0 146 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 HDGFL3Q9Y3E1 203 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 LIPGQ9Y5X9 500 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 RGPD5Q99666 1765 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 OR4C46A6NHA9 309 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 FAM159BA6NKW6 160 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 DBX1A6NMT0 343 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 KLF11O14901 512 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 CNMDO75829 334 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 CLDN1O95832 211 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 DNAL4O96015 105 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 CFDP00746 253 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 GPX1P07203 203 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 EBLN1P0CF75 366 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 LAMP1P11279 417 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 MYOD1P15172 320 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 TSPOP30536 169 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SLC5A12Q1EHB4 618 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 FUNDC1Q8IVP5 155 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ZNF738Q8NE65 137 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 THAP3Q8WTV1 239 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 RAB40AQ8WXH6 277 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 TMEM158Q8WZ71 300 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 OR8B4Q96RC9 309 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 TRAPPC1Q9Y5R8 145 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 A0A0G2JLL6 359 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 TRBV11-1A0A0K0K1C0 115 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 DCTN6O00399 190 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SOCS2O14508 198 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 AKR7A3O95154 331 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 HPP00738 406 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 RPS14P62263 151 aaKnown RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 BAXQ07812 192 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 OR4D1Q15615 310 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 BEX5Q5H9J7 111 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 RNFT1Q5M7Z0 435 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ZBTB37Q5TC79 503 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 NPSR1Q6W5P4 371 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 PRRT2Q7Z6L0 340 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 OR6V1Q8N148 313 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 SLC39A11Q8N1S5 342 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 MS4A15Q8N5U1 240 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ZFP62Q8NB50 900 aaPredicted RBP2.53□□□□□ -2
SCN1A-219ENST00000641575 OR10A7Q8NGE5 316 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 C4orf36Q96KX1 117 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 MS4A10Q96PG2 267 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ABHD14AQ9BUJ0 271 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 ABHD6Q9BV23 337 aa2.53□□□□□ -2
SCN1A-219ENST00000641575 DMAC2Q9NW81 257 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms