RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 LRRN1Q6UXK5 716 aa16.14■□□□□ 0.17
CLN3-260ENST00000637578 TEX29Q8N6K0 151 aa16.14■□□□□ 0.17
CLN3-260ENST00000637578 OR10H4Q8NGA5 316 aa16.14■□□□□ 0.17
CLN3-260ENST00000637578 ASB17Q8WXJ9 295 aa16.14■□□□□ 0.17
CLN3-260ENST00000637578 ZNF184Q99676 751 aaPredicted RBP16.14■□□□□ 0.17
CLN3-260ENST00000637578 METRNQ9UJH8 293 aa16.14■□□□□ 0.17
CLN3-260ENST00000637578 RPL36Q9Y3U8 105 aaKnown RBP16.14■□□□□ 0.17
CLN3-260ENST00000637578 IGHV3-64DA0A0J9YX35 117 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 A0A1W2PQL4 384 aaPredicted RBP16.13■□□□□ 0.17
CLN3-260ENST00000637578 GGT3PA6NGU5 568 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 A8MXK9 166 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 ZNF670-ZNF695F2Z2N8 137 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 J3QRE1 110 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 PSMD9O00233 223 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 CYB5R3P00387 301 aaPredicted RBP16.13■□□□□ 0.17
CLN3-260ENST00000637578 WNT2P09544 360 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 OR2T7P0C7T2 308 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 LCN2P80188 198 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 DCAF12L2Q5VW00 463 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 ZNF322Q6U7Q0 402 aaPredicted RBP16.13■□□□□ 0.17
CLN3-260ENST00000637578 SSX6Q7RTT6 188 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 KLBQ86Z14 1044 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 PLPP7Q8NBV4 271 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 OR2T27Q8NH04 317 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 SGK3Q96BR1 496 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 RASSF4Q9H2L5 321 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 METTL17Q9H7H0 456 aaPredicted RBP16.13■□□□□ 0.17
CLN3-260ENST00000637578 SP140LQ9H930 580 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 EXOGQ9Y2C4 368 aaKnown RBP16.13■□□□□ 0.17
CLN3-260ENST00000637578 ARHGAP32A7KAX9 2087 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 LRRC30A6NM36 301 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 H2BFMP0C1H6 154 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 MYF6P23409 242 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 HSD11B1P28845 292 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 DDOSTP39656 456 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 SEC61A1P61619 476 aaKnown RBP16.13■□□□□ 0.17
CLN3-260ENST00000637578 ROM1Q03395 351 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 OR8G1Q15617 311 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 KCTD18Q6PI47 426 aaPredicted RBP16.13■□□□□ 0.17
CLN3-260ENST00000637578 KRT77Q7Z794 578 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 C1orf87Q8N0U7 546 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 OR52H1Q8NGJ2 320 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 ZNF319Q9P2F9 582 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 OPN4Q9UHM6 478 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 RAB26Q9ULW5 256 aa16.13■□□□□ 0.17
CLN3-260ENST00000637578 WNK2Q9Y3S1 2297 aa16.12■□□□□ 0.17
CLN3-260ENST00000637578 CEACAM18A8MTB9 384 aa16.12■□□□□ 0.17
CLN3-260ENST00000637578 PHYHO14832 338 aa16.12■□□□□ 0.17
CLN3-260ENST00000637578 MAGEB4O15481 346 aaPredicted RBP16.12■□□□□ 0.17
CLN3-260ENST00000637578 ZNF121P58317 390 aaPredicted RBP16.12■□□□□ 0.17
CLN3-260ENST00000637578 FAM3AP98173 230 aa16.12■□□□□ 0.17
CLN3-260ENST00000637578 MPPED2Q15777 294 aa16.12■□□□□ 0.17
CLN3-260ENST00000637578 C1QL2Q7Z5L3 287 aa16.12■□□□□ 0.17
CLN3-260ENST00000637578 OR56B2PQ8NGI1 322 aa16.12■□□□□ 0.17
CLN3-260ENST00000637578 OR8B4Q96RC9 309 aa16.12■□□□□ 0.17
CLN3-260ENST00000637578 MRPS18AQ9NVS2 196 aaKnown RBP16.12■□□□□ 0.17
CLN3-260ENST00000637578 IKZF2Q9UKS7 526 aa16.12■□□□□ 0.17
CLN3-260ENST00000637578 MYRFQ9Y2G1 1151 aa16.12■□□□□ 0.17
CLN3-260ENST00000637578 LRP12Q9Y561 859 aa16.12■□□□□ 0.17
CLN3-260ENST00000637578 STAB1Q9NY15 2570 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 LOC105371242A0A075B767 164 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 TRAPPC2LH3BP13 241 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 TCF21O43680 179 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 FSHBP01225 129 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 ACTC1P68032 377 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 ACTA1P68133 377 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 SRSF2Q01130 221 aaKnown RBP16.11■□□□□ 0.17
CLN3-260ENST00000637578 RAB40BQ12829 278 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 ZNF404Q494X3 552 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 LIPNQ5VXI9 398 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.11■□□□□ 0.17
CLN3-260ENST00000637578 ZNF679Q8IYX0 411 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 SPERTQ8NA61 448 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 OR52I1Q8NGK6 324 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 TMEM246Q9BRR3 403 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 ADAT1Q9BUB4 502 aaKnown RBP16.11■□□□□ 0.17
CLN3-260ENST00000637578 MROQ9BYG7 248 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 MMP26Q9NRE1 261 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 N6AMT1Q9Y5N5 214 aa16.11■□□□□ 0.17
CLN3-260ENST00000637578 hCG_38984A0A1B0GV85 526 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 XPNPEP2O43895 674 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 FAM20BO75063 409 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 ZNF205O95201 554 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 FADS2O95864 444 aaKnown RBP16.1■□□□□ 0.17
CLN3-260ENST00000637578 ANXA2P07355 339 aaKnown RBP16.1■□□□□ 0.17
CLN3-260ENST00000637578 ZNF85Q03923 595 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 FAM201AQ5SY85 155 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 PRAMEF6Q5VXH4 476 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 DEGS2Q6QHC5 323 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 FAM57BQ71RH2 274 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 ACBD7Q8N6N7 88 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 DEFB108BQ8NET1 73 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 REEP6Q96HR9 211 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 CNBD2Q96M20 576 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 RGCCQ9H4X1 137 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 C7orf69Q9H7B7 122 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 MIOXQ9UGB7 285 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 MRM2Q9UI43 246 aaKnown RBP16.1■□□□□ 0.17
CLN3-260ENST00000637578 LRCH1Q9Y2L9 728 aa16.1■□□□□ 0.17
CLN3-260ENST00000637578 PPIAL4AQ9Y536 164 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms