RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TMEM92Q6UXU6 159 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 UBE3DQ7Z6J8 389 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 BAGE3Q86Y29 109 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 BAGE2Q86Y30 109 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 OSR2Q8N2R0 312 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 OR10G3Q8NGC4 313 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 BTF3L4Q96K17 158 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 DLL4Q9NR61 685 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 PAPPAQ13219 1627 aa12.57□□□□□ -0.4
CPSF1-212ENST00000616140 ZNF727A8MUV8 499 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 ALG1L2C9J202 215 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 CYB5BO43169 146 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 FLI1Q01543 452 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-212ENST00000616140 ZNF92Q03936 586 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 EIF4EBP2Q13542 120 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-212ENST00000616140 CDONQ4KMG0 1287 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 THNSL2Q86YJ6 484 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 FAM185AQ8N0U4 392 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 KCNIP2Q9NS61 270 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 KLF13Q9Y2Y9 288 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-212ENST00000616140 RIF1Q5UIP0 2472 aaKnown RBP12.56□□□□□ -0.4
CPSF1-212ENST00000616140 C4orf47A7E2U8 309 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 NPIPB8E9PQR5 432 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 CTAG2O75638 210 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 NDUFB7P17568 137 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 HIST2H3AQ71DI3 136 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 PTP4A1Q93096 173 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 C10orf90Q96M02 699 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 OR8U8P0C7N1 319 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 CD96P40200 585 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 DMKNQ6E0U4 476 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-212ENST00000616140 DUSP18Q8NEJ0 188 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 OR5AP2Q8NGF4 316 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 OR1L3Q8NH93 324 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 GPBAR1Q8TDU6 330 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 TSPAN32Q96QS1 320 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 TUBAL3A6NHL2 446 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 CST7O76096 145 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 IAPPP10997 89 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 GABRA4P48169 554 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 MRM1Q6IN84 353 aaKnown RBP12.56□□□□□ -0.4
CPSF1-212ENST00000616140 FAM199XQ6PEV8 388 aaPredicted RBP12.56□□□□□ -0.4
CPSF1-212ENST00000616140 GCNT2Q8N0V5 402 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 OR4D9Q8NGE8 314 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 OSGIN2Q9Y236 505 aa12.56□□□□□ -0.4
CPSF1-212ENST00000616140 SH2D1BO14796 132 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 THBS3P49746 956 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 SCGB2A2Q13296 93 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 KISS1Q15726 138 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 ZNF626Q68DY1 528 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 IL34Q6ZMJ4 242 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 VASH2Q86V25 355 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 ZDHHC23Q8IYP9 409 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 C1orf87Q8N0U7 546 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 C15orf54Q8N8G6 183 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 RXFP4Q8TDU9 374 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 ASB13Q8WXK3 278 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 ZNF764Q96H86 408 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-212ENST00000616140 ARHGAP5-AS1Q96IT6 56 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 FOXB1Q99853 325 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 RIMS4Q9H426 269 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-212ENST00000616140 ZNF816-ZNF321PA0A0X1KG74 233 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 H3BMH7 237 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 WNT11O96014 354 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 MGST1P10620 155 aaKnown RBP12.55□□□□□ -0.4
CPSF1-212ENST00000616140 PSG6Q00889 435 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 PPP1R1AQ13522 171 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 PDCD1Q15116 288 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 PNLIPRP3Q17RR3 467 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 C1QL3Q5VWW1 255 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 FAM109BQ6ICB4 259 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-212ENST00000616140 DEGS2Q6QHC5 323 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 RPUSD4Q96CM3 377 aaKnown RBP12.55□□□□□ -0.4
CPSF1-212ENST00000616140 F6UZH7 168 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 ARR3P36575 388 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 GZMMP51124 257 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 FABP6P51161 128 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 CCL7P80098 99 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 NHLRC1Q6VVB1 395 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 CATSPERDQ86XM0 798 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 ZNF687Q8N1G0 1237 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 ZNF321PQ8N8H1 164 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 ZC3HAV1LQ96H79 300 aaKnown RBP12.55□□□□□ -0.4
CPSF1-212ENST00000616140 ADAM19Q9H013 955 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 MIXL1Q9H2W2 232 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 SLC17A5Q9NRA2 495 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 STRAPQ9Y3F4 350 aaKnown RBP12.55□□□□□ -0.4
CPSF1-212ENST00000616140 LOXL2Q9Y4K0 774 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 V9GYH0 126 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 DOPEY2Q9Y3R5 2298 aa12.55□□□□□ -0.4
CPSF1-212ENST00000616140 IGHV1OR21-1A0A087WYE8 117 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 BTBD17A6NE02 478 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 NPBWR1P48145 328 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 HABP2Q14520 560 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-212ENST00000616140 ZNF141Q15928 474 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 SCCPDHQ8NBX0 429 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 KCNE4Q8WWG9 221 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 FLRT3Q9NZU0 649 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 TMEM272A0A1B0GTI8 110 aa12.54□□□□□ -0.4
CPSF1-212ENST00000616140 MPZL1O95297 269 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms