RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 OR52L2PQ8NGH6 319 aa18.37■□□□□ 0.53
UPF1-207ENST00000599848 PSENENQ9NZ42 101 aa18.37■□□□□ 0.53
UPF1-207ENST00000599848 SPAARA0A1B0GVQ0 90 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 DNPH1O43598 174 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 APEHP13798 732 aaKnown RBP18.36■□□□□ 0.53
UPF1-207ENST00000599848 ENDOGQ14249 297 aaKnown RBP18.36■□□□□ 0.53
UPF1-207ENST00000599848 OR52N4Q8NGI2 321 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 OR10R2Q8NGX6 335 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 RNASEK-C17orf49H0YIS7 233 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 LIMS3P0CW19 117 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 LIMS4P0CW20 117 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 MYF5P13349 255 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 EPHA2P29317 976 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 GPM6AP51674 278 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 OPCMLQ14982 345 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 ADAM5Q6NVV9 412 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 SFT2D1Q8WV19 159 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 EXTL1Q92935 676 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 ZFP36L2P47974 494 aaKnown RBP18.36■□□□□ 0.53
UPF1-207ENST00000599848 ALKBH6Q3KRA9 238 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 ADPRHL1Q8NDY3 354 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 SLC25A40Q8TBP6 338 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 FBXL2Q9UKC9 423 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 CTDSP2O14595 271 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 GP1BAP07359 652 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 TCTN1Q2MV58 587 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 KIRREL2Q6UWL6 708 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 SLC35D1Q9NTN3 355 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 COLQQ9Y215 455 aaPredicted RBP18.36■□□□□ 0.53
UPF1-207ENST00000599848 NHSQ6T4R5 1651 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 PKD1L3Q7Z443 1732 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 FCMRO60667 390 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 PRDX4Q13162 271 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 FAM209AQ5JX71 171 aa18.36■□□□□ 0.53
UPF1-207ENST00000599848 BEX5Q5H9J7 111 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 LINC00299Q6ZSB3 139 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 BCL2L2Q92843 193 aaPredicted RBP18.35■□□□□ 0.53
UPF1-207ENST00000599848 FITM1A5D6W6 292 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 ZNF716A6NP11 495 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 KRBOX1C9JBD0 128 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 SULT1A3P0DMM9 295 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 SULT1A4P0DMN0 295 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 T-ENOLP0DO92 83 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 GCAP28676 217 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 SPATA46Q5T0L3 261 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 SPNS3Q6ZMD2 512 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 CNRIP1Q96F85 164 aaPredicted RBP18.35■□□□□ 0.53
UPF1-207ENST00000599848 AQP8O94778 261 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 RELAQ04206 551 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 SKP2Q13309 424 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 D2HGDHQ8N465 521 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 SLC7A6Q92536 515 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 TRAPPC4Q9Y296 219 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 CDK5R1Q15078 307 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 C19orf35Q6ZS72 473 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 KCNRGQ8N5I3 272 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 OR8U1Q8NH10 309 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 HMGCLL1Q8TB92 370 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 CLDN23Q96B33 292 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 GABARAPL3Q9BY60 117 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 POFUT1Q9H488 388 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 FBXO34Q9NWN3 711 aa18.35■□□□□ 0.53
UPF1-207ENST00000599848 LANCL1O43813 399 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 RBP4P02753 201 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 ARNTP27540 789 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 FZD5Q13467 585 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 OR2B11Q5JQS5 317 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 DOLPP1Q86YN1 238 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 PTP4A1Q93096 173 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 SAP30LQ9HAJ7 183 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 TAF9BQ9HBM6 251 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 CDC14BO60729 498 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 TXNDC12O95881 172 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 ZNF486Q96H40 463 aaPredicted RBP18.34■□□□□ 0.53
UPF1-207ENST00000599848 RNF2Q99496 336 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 PRR14Q9BWN1 585 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 KPTNQ9Y664 436 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 ALS2Q96Q42 1657 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 ZNF705GA8MUZ8 300 aaPredicted RBP18.34■□□□□ 0.53
UPF1-207ENST00000599848 PRSS44E7EML9 344 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 RPL13AP40429 203 aaKnown RBP18.34■□□□□ 0.53
UPF1-207ENST00000599848 FHL5Q5TD97 284 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 PWWP2BQ6NUJ5 590 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 ACSM6Q6P461 480 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 RBM45Q8IUH3 476 aaKnown RBP18.34■□□□□ 0.53
UPF1-207ENST00000599848 DYNLRB2Q8TF09 96 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 ARSGQ96EG1 525 aa18.34■□□□□ 0.53
UPF1-207ENST00000599848 DVL3Q92997 716 aaPredicted RBP18.34■□□□□ 0.53
UPF1-207ENST00000599848 OR2F2O95006 317 aa18.33■□□□□ 0.53
UPF1-207ENST00000599848 RRASP10301 218 aa18.33■□□□□ 0.53
UPF1-207ENST00000599848 OR2F1Q13607 317 aa18.33■□□□□ 0.53
UPF1-207ENST00000599848 PMS2CLQ68D20 193 aa18.33■□□□□ 0.53
UPF1-207ENST00000599848 ZNF485Q8NCK3 441 aa18.33■□□□□ 0.53
UPF1-207ENST00000599848 RPL3LQ92901 407 aaKnown RBP18.33■□□□□ 0.53
UPF1-207ENST00000599848 ERGIC1Q969X5 290 aa18.33■□□□□ 0.53
UPF1-207ENST00000599848 EDIL3O43854 480 aa18.33■□□□□ 0.53
UPF1-207ENST00000599848 DLEU7Q6UYE1 221 aa18.33■□□□□ 0.53
UPF1-207ENST00000599848 OR51S1Q8NGJ8 323 aa18.33■□□□□ 0.53
UPF1-207ENST00000599848 OR8B4Q96RC9 309 aa18.33■□□□□ 0.53
UPF1-207ENST00000599848 RHNO1Q9BSD3 238 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms