RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SLC25A1P53007 311 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 SLC16A1P53985 500 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 UBE2MP61081 183 aaKnown RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 EIF5AP63241 154 aaKnown RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 MEF2AQ02078 507 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 PJVKQ0ZLH3 352 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 PDZK1IP1Q13113 114 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TSTA3Q13630 321 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 MELKQ14680 651 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 MEF2DQ14814 521 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR1C1Q15619 314 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 RPE65Q16518 533 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 C2orf68Q2NKX9 166 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TMEM249Q2WGJ8 235 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 ARHGAP11BQ3KRB8 267 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 Q3ZCU0 254 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 AWAT1Q58HT5 328 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 EMC4Q5J8M3 183 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 EXOSC6Q5RKV6 272 aaKnown RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR4C11Q6IEV9 310 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 STEAP1BQ6NZ63 245 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 FAHD2BQ6P2I3 314 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 ANKRD16Q6P6B7 361 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TMEM220Q6QAJ8 160 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 FAM111BQ6SJ93 734 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TMEM205Q6UW68 189 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 Q6ZVL8 140 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 LRRTM1Q86UE6 522 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 JAZF1Q86VZ6 243 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 STX12Q86Y82 276 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 DND1Q8IYX4 353 aaKnown RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 SAMD14Q8IZD0 417 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 GABRG1Q8N1C3 465 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 ZNF619Q8N2I2 560 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR2L13Q8N349 312 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 LILRB2Q8N423 598 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 LILRA3Q8N6C8 439 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 ZDHHC22Q8N966 263 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 INO80EQ8NBZ0 244 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 ZNF740Q8NDX6 193 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 SDR9C7Q8NEX9 313 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 NUP43Q8NFH3 380 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR4K14Q8NGD5 310 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR1J2Q8NGS2 313 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR2L2Q8NH16 312 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 PFN4Q8NHR9 129 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 GPX8Q8TED1 209 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 DUSP19Q8WTR2 217 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 SNX33Q8WV41 574 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TMEM171Q8WVE6 324 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TCTEX1D2Q8WW35 142 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 PSMF1Q92530 271 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 RGP1Q92546 391 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 SCAMP4Q969E2 229 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 SGK3Q96BR1 496 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 BPIFA2Q96DR5 249 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 SAT2Q96F10 170 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 PIK3IP1Q96FE7 263 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 WDR89Q96FK6 387 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 FAHD2AQ96GK7 314 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 ZNF75AQ96N20 296 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 ZNF285Q96NJ3 590 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 F2RL3Q96RI0 385 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 GPX7Q96SL4 187 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 CMSS1Q9BQ75 279 aaKnown RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 ZNF426Q9BUY5 554 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TINAGL1Q9GZM7 467 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 QRSL1Q9H0R6 528 aaKnown RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR52A5Q9H2C5 316 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR51V1Q9H2C8 321 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 POFUT1Q9H488 388 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 KLHL31Q9H511 634 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TMEM185BQ9H7F4 350 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TUBA4BQ9H853 241 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 SEC61A2Q9H9S3 476 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 FN3KRPQ9HA64 309 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 SLC22A11Q9NSA0 550 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 UQCC1Q9NVA1 299 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 RCC2Q9P258 522 aaKnown RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 SEMA5BQ9P283 1151 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 STEAP1Q9UHE8 339 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TAC3Q9UHF0 121 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 GNG8Q9UK08 70 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 KCNS2Q9ULS6 477 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 WDR45Q9Y484 360 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 WIF1Q9Y5W5 379 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 NSG1A0A0A6YYJ2 146 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 A0A0B4J2E0 115 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 LOC100289279A0A1B0GTE1 492 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 A0A1B0GX12 115 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 RBMY1BA6NDE4 496 aaKnown RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 RBMY1EA6NEQ0 496 aaKnown RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 TVP23AA6NH52 213 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 TMEM212A6NML5 194 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 COLCA2A8K830 154 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 F5H0A9 414 aaPredicted RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 MFNGO00587 321 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 SLC17A2O00624 439 aa3.65□□□□□ -1.83
LIG3-211ENST00000588713 EIF1AYO14602 144 aaKnown RBP3.65□□□□□ -1.83
LIG3-211ENST00000588713 ARPC3O15145 178 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms