RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 OR3A4PP47883 348 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 OR8B8Q15620 311 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 UBE2V2Q15819 145 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 ZNF260Q3ZCT1 412 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 CLVS2Q5SYC1 327 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 SFRP4Q6FHJ7 346 aaPredicted RBP12.35□□□□□ -0.43
LIG3-205ENST00000585941 ACBD4Q8NC06 268 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 CPEB3Q8NE35 698 aaKnown RBP12.35□□□□□ -0.43
LIG3-205ENST00000585941 OR10R2Q8NGX6 335 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 SNIP1Q8TAD8 396 aaKnown RBP12.35□□□□□ -0.43
LIG3-205ENST00000585941 SPACA5Q96QH8 159 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 TMEM59Q9BXS4 323 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 GHITMQ9H3K2 345 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 OPA3Q9H6K4 179 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 MYEF2Q9P2K5 600 aaKnown RBP12.35□□□□□ -0.43
LIG3-205ENST00000585941 MED12LQ86YW9 2145 aa12.35□□□□□ -0.43
LIG3-205ENST00000585941 MYO7BQ6PIF6 2116 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 A0A096LPE4 126 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 A0A0A6YYJ9 748 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 hCG_38984A0A1B0GV85 526 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 A0A1W2PPZ6 126 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 OR14I1A6ND48 311 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 KLK10O43240 276 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 CDC14BO60729 498 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 NDUFB6O95139 128 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 CNOT4O95628 575 aaKnown RBP12.34□□□□□ -0.43
LIG3-205ENST00000585941 CYB5AP00167 134 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 GSTP1P09211 210 aaKnown RBP12.34□□□□□ -0.43
LIG3-205ENST00000585941 GUCA2AQ02747 115 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 ARL6IP1Q15041 203 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 SF3B4Q15427 424 aaKnown RBP eCLIP12.34□□□□□ -0.43
LIG3-205ENST00000585941 GSG1Q2KHT4 349 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 ZFP69Q49AA0 526 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 C9orf135Q5VTT2 229 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 TMEM42Q69YG0 159 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 STEAP1BQ6NZ63 245 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 CCDC36Q8IYA8 594 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 TCTE3Q8IZS6 198 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 CHST4Q8NCG5 386 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 STEAP2Q8NFT2 490 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 OR56B1Q8NGI3 324 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 OR1K1Q8NGR3 316 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 OR2AE1Q8NHA4 323 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 LPAR5Q9H1C0 372 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 MED28Q9H204 178 aa12.34□□□□□ -0.43
LIG3-205ENST00000585941 TNRC6AQ8NDV7 1962 aaKnown RBP12.33□□□□□ -0.43
LIG3-205ENST00000585941 MPIG6BO95866 241 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 HLA-HP01893 362 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 CD79AP11912 226 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 ACKR3P25106 362 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 STOMP27105 288 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 VEGFCP49767 419 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 RAB1AP62820 205 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 FAM3AP98173 230 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 TGFBR3Q03167 851 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 RBMS2Q15434 407 aaKnown RBP12.33□□□□□ -0.44
LIG3-205ENST00000585941 MOGAT2Q3SYC2 334 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 CDNFQ49AH0 187 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 CD276Q5ZPR3 534 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 OR2A2Q6IF42 318 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 ZNF782Q6ZMW2 699 aaPredicted RBP12.33□□□□□ -0.44
LIG3-205ENST00000585941 Q6ZTK2 550 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 LHFPL2Q6ZUX7 228 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 ZNF584Q8IVC4 421 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 GABRG1Q8N1C3 465 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 OR4C16Q8NGL9 310 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 TNFAIP8L1Q8WVP5 186 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 WNT2BQ93097 391 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 APOBEC3DQ96AK3 386 aaPredicted RBP12.33□□□□□ -0.44
LIG3-205ENST00000585941 MED30Q96HR3 178 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 GAL3ST1Q99999 423 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 C12orf49Q9H741 205 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 NOX3Q9HBY0 568 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 B3GNT2Q9NY97 397 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 PRSS50Q9UI38 385 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 CUL9Q8IWT3 2517 aa12.33□□□□□ -0.44
LIG3-205ENST00000585941 A0A1B0GUH1 482 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 AHRRA9YTQ3 701 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 CRTAPO75718 401 aaPredicted RBP12.32□□□□□ -0.44
LIG3-205ENST00000585941 MECP2P51608 486 aaKnown RBP12.32□□□□□ -0.44
LIG3-205ENST00000585941 MALLQ13021 153 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 MEF2DQ14814 521 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 PNLIPRP3Q17RR3 467 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 TMEM255AQ5JRV8 349 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 METTL11BQ5VVY1 283 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 FAM214BQ7L5A3 538 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 FAM89BQ8N5H3 189 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 BCL2L2Q92843 193 aaPredicted RBP12.32□□□□□ -0.44
LIG3-205ENST00000585941 TRIB1Q96RU8 372 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 TRAF4Q9BUZ4 470 aaPredicted RBP12.32□□□□□ -0.44
LIG3-205ENST00000585941 OR51J1Q9H342 316 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 ING4Q9UNL4 249 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 SLC7A11Q9UPY5 501 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 LOC100509620A0A075B734 347 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 ZNF816-ZNF321PA0A0X1KG74 233 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 TMEM235A6NFC5 223 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 ICMTO60725 284 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 IL18BPO95998 194 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 NRASP01111 189 aa12.32□□□□□ -0.44
LIG3-205ENST00000585941 EDN3P14138 238 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms