RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CLPXO76031 633 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 FAM157BP0CG42 384 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 ZNF250P15622 560 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 ATF1P18846 271 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 GCH1P30793 250 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 SELENOVP59797 346 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 MXD1Q05195 221 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 HNRNPA0Q13151 305 aaKnown RBP13.13□□□□□ -0.31
SS18-215ENST00000580642 TNK1Q13470 666 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 RIN1Q13671 783 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 RGS7BPQ6MZT1 257 aaPredicted RBP13.13□□□□□ -0.31
SS18-215ENST00000580642 MZT2AQ6P582 158 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 OR56B2PQ8NGI1 322 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 MCFD2Q8NI22 146 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 CMBLQ96DG6 245 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 CMTM3Q96MX0 182 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 SOX7Q9BT81 388 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 OR2J1Q9GZK6 312 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 TPK1Q9H3S4 243 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 METTL17Q9H7H0 456 aaPredicted RBP13.13□□□□□ -0.31
SS18-215ENST00000580642 KLF2Q9Y5W3 355 aaPredicted RBP13.13□□□□□ -0.31
SS18-215ENST00000580642 ZFYVE26Q68DK2 2539 aa13.13□□□□□ -0.31
SS18-215ENST00000580642 A0A0G2JK05 382 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 GMDSO60547 372 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 NRASP01111 189 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 OCMP0CE72 109 aaPredicted RBP13.12□□□□□ -0.31
SS18-215ENST00000580642 FAHP16930 419 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 ADRA2CP18825 462 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 EVX1P49640 407 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 FUT6P51993 359 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 SNTB2Q13425 540 aaKnown RBP13.12□□□□□ -0.31
SS18-215ENST00000580642 CDSNQ15517 529 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 C1orf100Q5SVJ3 147 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 LYPD6Q86Y78 171 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 OR6M1Q8NGM8 313 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 UBASH3BQ8TF42 649 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 FAM222BQ8WU58 562 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 SORCS2Q96PQ0 1159 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 BARHL1Q9BZE3 327 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 NPDC1Q9NQX5 325 aaPredicted RBP13.12□□□□□ -0.31
SS18-215ENST00000580642 GHRLQ9UBU3 117 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 PLEKHB1Q9UF11 243 aaPredicted RBP13.12□□□□□ -0.31
SS18-215ENST00000580642 SLC7A11Q9UPY5 501 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 AK6Q9Y3D8 172 aaKnown RBP13.12□□□□□ -0.31
SS18-215ENST00000580642 PEX16Q9Y5Y5 336 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 PCNX1Q96RV3 2341 aa13.12□□□□□ -0.31
SS18-215ENST00000580642 HIVEP3Q5T1R4 2406 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 A0A1B0GWJ7 208 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 SLC17A2O00624 439 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 LMX1BO60663 402 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 IGHV3-13P01766 116 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 MAS1P04201 325 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 CLEC2LP0C7M8 214 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 CALCBP10092 127 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 BSPH1Q075Z2 132 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 PSG7Q13046 419 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 HLXQ14774 488 aaPredicted RBP13.11□□□□□ -0.31
SS18-215ENST00000580642 LHFPL2Q6ZUX7 228 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 OR5AS1Q8N127 324 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 SPERTQ8NA61 448 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 OR5A2Q8NGI9 324 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 OR13C9Q8NGT0 318 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 SYNPRQ8TBG9 265 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 SSC4DQ8WTU2 575 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 HIST1H2AAQ96QV6 131 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 POFUT1Q9H488 388 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 CYSLTR2Q9NS75 346 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 PURGQ9UJV8 347 aaKnown RBP13.11□□□□□ -0.31
SS18-215ENST00000580642 CMAHPQ9Y471 501 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 ETV7Q9Y603 341 aa13.11□□□□□ -0.31
SS18-215ENST00000580642 IGLV3-9A0A075B6K5 115 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 OR5B21A6NL26 309 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 H3BSH0 61 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 ABCD4O14678 606 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 CD3EP07766 207 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 UBBP0CG47 229 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 IGFBP2P18065 325 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 KIR2DL3P43628 341 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 RBP2P50120 134 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 MZT1Q08AG7 82 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 UBE2V2Q15819 145 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 CEACAM21Q3KPI0 293 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 DDI2Q5TDH0 399 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 FAM166AQ6J272 317 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 ALKBH2Q6NS38 261 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 SLC22A25Q6T423 547 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 NR2C2APQ86WQ0 139 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 ZDHHC23Q8IYP9 409 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 PNLDC1Q8NA58 520 aaKnown RBP13.1□□□□□ -0.31
SS18-215ENST00000580642 OR8G5Q8NG78 346 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 TMEM171Q8WVE6 324 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 ZC3HAV1LQ96H79 300 aaKnown RBP13.1□□□□□ -0.31
SS18-215ENST00000580642 SLC30A2Q9BRI3 323 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 STEAP1Q9UHE8 339 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 GPR160Q9UJ42 338 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 FBXO9Q9UK97 447 aaPredicted RBP13.1□□□□□ -0.31
SS18-215ENST00000580642 RHBDD3Q9Y3P4 386 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 PMF1-BGLAPU3KQ54 211 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 RTTNQ86VV8 2226 aa13.1□□□□□ -0.31
SS18-215ENST00000580642 IGKV1-9A0A0C4DH69 117 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms