RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SPATA3Q8NHX4 192 aa19.98■□□□□ 0.79
SHMT1-206ENST00000579558 NANPQ8TBE9 248 aa19.98■□□□□ 0.79
SHMT1-206ENST00000579558 MNTQ99583 582 aa19.98■□□□□ 0.79
SHMT1-206ENST00000579558 PPP1R3EQ9H7J1 279 aa19.98■□□□□ 0.79
SHMT1-206ENST00000579558 FAM206AQ9NX38 181 aa19.98■□□□□ 0.79
SHMT1-206ENST00000579558 OPN4Q9UHM6 478 aa19.98■□□□□ 0.79
SHMT1-206ENST00000579558 ACOD1A6NK06 481 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 LGALS8O00214 317 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 PHYHO14832 338 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 ZNF12P17014 697 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 EPHA1P21709 976 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 ACKR3P25106 362 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 DCTDP32321 178 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 CXCR4P61073 352 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 ZNF829Q3KNS6 432 aaPredicted RBP19.97■□□□□ 0.79
SHMT1-206ENST00000579558 SFRP4Q6FHJ7 346 aaPredicted RBP19.97■□□□□ 0.79
SHMT1-206ENST00000579558 LYPD2Q6UXB3 125 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 WDR86Q86TI4 376 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 HAO2Q9NYQ3 351 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 INSIG2Q9Y5U4 225 aa19.97■□□□□ 0.79
SHMT1-206ENST00000579558 ANXA2P2A6NMY6 339 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 ZNF670-ZNF695F2Z2N8 137 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 C3orf80F5H4A9 247 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 PITPNBP48739 271 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 IL5RAQ01344 420 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 ZNF154Q13106 437 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 KCNJ8Q15842 424 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 ZNF322Q6U7Q0 402 aaPredicted RBP19.96■□□□□ 0.79
SHMT1-206ENST00000579558 C10orf67Q8IYJ2 551 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 OR1M1Q8NGA1 313 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 OR51G2Q8NGK0 314 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 FAM81AQ8TBF8 368 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 MICU1Q9BPX6 476 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 PBOV1Q9GZY1 135 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 CLN6Q9NWW5 311 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 WARS2Q9UGM6 360 aaKnown RBP19.96■□□□□ 0.79
SHMT1-206ENST00000579558 ORC6Q9Y5N6 252 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 MPC1Q9Y5U8 109 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 STAB1Q9NY15 2570 aa19.96■□□□□ 0.79
SHMT1-206ENST00000579558 A0A0U1RQV5 110 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 ZNF850A8MQ14 1090 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 EI24O14681 340 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 ALPLP05186 524 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 PRDX4Q13162 271 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 COMMD2Q86X83 199 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 GCSAMQ8N6F7 178 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 OR8J1Q8NGP2 316 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 PIGCQ92535 297 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 ITPKCQ96DU7 683 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 APOL4Q9BPW4 351 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 MRI1Q9BV20 369 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 RTL8AQ9BWD3 113 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 ABCB9Q9NP78 766 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 TRIM36Q9NQ86 728 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 CLN8Q9UBY8 286 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 AUP1Q9Y679 476 aa19.95■□□□□ 0.78
SHMT1-206ENST00000579558 TRAV38-1A0A0B4J264 116 aa19.94■□□□□ 0.78
SHMT1-206ENST00000579558 OOEPA6NGQ2 149 aa19.94■□□□□ 0.78
SHMT1-206ENST00000579558 CST4P01036 141 aa19.94■□□□□ 0.78
SHMT1-206ENST00000579558 HTR1FP30939 366 aa19.94■□□□□ 0.78
SHMT1-206ENST00000579558 CDC42P60953 191 aa19.94■□□□□ 0.78
SHMT1-206ENST00000579558 CSNK2BP67870 215 aa19.94■□□□□ 0.78
SHMT1-206ENST00000579558 MFGE8Q08431 387 aaPredicted RBP19.94■□□□□ 0.78
SHMT1-206ENST00000579558 C11orf53Q8IXP5 236 aa19.94■□□□□ 0.78
SHMT1-206ENST00000579558 GALNT4Q8N4A0 578 aa19.94■□□□□ 0.78
SHMT1-206ENST00000579558 RNPEPL1Q9HAU8 725 aa19.94■□□□□ 0.78
SHMT1-206ENST00000579558 USE1Q9NZ43 259 aa19.94■□□□□ 0.78
SHMT1-206ENST00000579558 GTF2A1LQ9UNN4 478 aa19.94■□□□□ 0.78
SHMT1-206ENST00000579558 DOCK11Q5JSL3 2073 aa19.93■□□□□ 0.78
SHMT1-206ENST00000579558 MAGEB4O15481 346 aaPredicted RBP19.93■□□□□ 0.78
SHMT1-206ENST00000579558 FSHBP01225 129 aa19.93■□□□□ 0.78
SHMT1-206ENST00000579558 PSMB10P40306 273 aa19.93■□□□□ 0.78
SHMT1-206ENST00000579558 MAP2K3P46734 347 aa19.93■□□□□ 0.78
SHMT1-206ENST00000579558 POU4F2Q12837 409 aa19.93■□□□□ 0.78
SHMT1-206ENST00000579558 WDR25Q64LD2 544 aaPredicted RBP19.93■□□□□ 0.78
SHMT1-206ENST00000579558 BTNL3Q6UXE8 466 aa19.93■□□□□ 0.78
SHMT1-206ENST00000579558 OR51E1Q8TCB6 317 aa19.93■□□□□ 0.78
SHMT1-206ENST00000579558 ZNF418Q8TF45 676 aaPredicted RBP19.93■□□□□ 0.78
SHMT1-206ENST00000579558 LRRC29Q8WV35 223 aa19.93■□□□□ 0.78
SHMT1-206ENST00000579558 RAB3IPQ96QF0 476 aaPredicted RBP19.93■□□□□ 0.78
SHMT1-206ENST00000579558 TBX5Q99593 518 aa19.93■□□□□ 0.78
SHMT1-206ENST00000579558 IMPAD1Q9NX62 359 aa19.93■□□□□ 0.78
SHMT1-206ENST00000579558 NUFIP1Q9UHK0 495 aaKnown RBP19.93■□□□□ 0.78
SHMT1-206ENST00000579558 A0A0A6YYJ9 748 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 IGHV2-70DA0A0C4DH43 119 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 LOC110117498-PIK3R3F6TDL0 507 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 RGS9O75916 674 aaPredicted RBP19.92■□□□□ 0.78
SHMT1-206ENST00000579558 LHBP01229 141 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 EGR1P18146 543 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 ALDH3A2P51648 485 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 PAX2Q02962 417 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 EGR3Q06889 387 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 ARMCX4Q5H9R4 360 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 ZDHHC23Q8IYP9 409 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 RAB40AQ8WXH6 277 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 OR5P3Q8WZ94 311 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 PPP1R14AQ96A00 147 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 FAM71F1Q96KD3 344 aaPredicted RBP19.92■□□□□ 0.78
SHMT1-206ENST00000579558 C19orf24Q9BVV8 132 aa19.92■□□□□ 0.78
SHMT1-206ENST00000579558 GPR84Q9NQS5 396 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms