RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 IGHV1-69DA0A0B4J2H0 117 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 GLCEO94923 617 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 IGHV1-69P01742 117 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 CFL1P23528 166 aaKnown RBP13.28□□□□□ -0.28
CLN3-229ENST00000567963 OPRL1P41146 370 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 CSNK2BP67870 215 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 RELBQ01201 579 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 GK3PQ14409 553 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 WDR82Q6UXN9 313 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 TIGD4Q8IY51 512 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 IQCF1Q8N6M8 205 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 KIR3DL3Q8N743 410 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 ST8SIA4Q92187 359 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 LHX4Q969G2 390 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 OTULINQ96BN8 352 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 OR10A2Q9H208 303 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 BEX1Q9HBH7 125 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 C1RLQ9NZP8 487 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 RPUSD1Q9UJJ7 312 aaKnown RBP13.28□□□□□ -0.28
CLN3-229ENST00000567963 RHBDD3Q9Y3P4 386 aa13.28□□□□□ -0.28
CLN3-229ENST00000567963 A0A1B0GW55 424 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 H3BN98 237 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 CDIPTO14735 213 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 KNG1P01042 644 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 DUX4L2P0CJ85 424 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 DUX4L3P0CJ86 424 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 DUX4L4P0CJ87 422 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 DUX4L5P0CJ88 424 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 DUX4L6P0CJ89 424 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 DUX4L7P0CJ90 424 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 RAP2AP10114 183 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 RAG2P55895 527 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 ELF3P78545 371 aaPredicted RBP13.27□□□□□ -0.29
CLN3-229ENST00000567963 GFOD2Q3B7J2 385 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 CDONQ4KMG0 1287 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 DUX4L9Q6RFH8 374 aaPredicted RBP13.27□□□□□ -0.29
CLN3-229ENST00000567963 FGFRL1Q8N441 504 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 CSNK2A3Q8NEV1 391 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 OR4F5Q8NH21 305 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 TBC1D15Q8TC07 691 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 GIPC3Q8TF64 312 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 SSMEM1Q8WWF3 244 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 CCL13Q99616 98 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 TLNRD1Q9H1K6 362 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 OR51V1Q9H2C8 321 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 BRD7Q9NPI1 651 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 DUX4Q9UBX2 424 aa13.27□□□□□ -0.29
CLN3-229ENST00000567963 CMYA5Q8N3K9 4069 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 ARRDC5A6NEK1 342 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.26□□□□□ -0.29
CLN3-229ENST00000567963 NDUFA7O95182 113 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 CST1P01037 141 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 H2BFMP0C1H6 154 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 GNALP38405 381 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 NAA10P41227 235 aaPredicted RBP13.26□□□□□ -0.29
CLN3-229ENST00000567963 WDR38Q5JTN6 314 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 SLC36A1Q7Z2H8 476 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 GALNT4Q8N4A0 578 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 LY6G5BQ8NDX9 201 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 C12orf43Q96C57 262 aaKnown RBP13.26□□□□□ -0.29
CLN3-229ENST00000567963 ITPKCQ96DU7 683 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 ASB9Q96DX5 294 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 SEH1LQ96EE3 360 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 PGAM5Q96HS1 289 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 CHID1Q9BWS9 393 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 PAPOLGQ9BWT3 736 aaKnown RBP13.26□□□□□ -0.29
CLN3-229ENST00000567963 RGCCQ9H4X1 137 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 KPTNQ9Y664 436 aa13.26□□□□□ -0.29
CLN3-229ENST00000567963 A0A0U1RQK1 487 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 LYNP07948 512 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 T-ENOLP0DO92 83 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 PAICSP22234 425 aaKnown RBP13.25□□□□□ -0.29
CLN3-229ENST00000567963 CALB2P22676 271 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 RPL15P61313 204 aaKnown RBP13.25□□□□□ -0.29
CLN3-229ENST00000567963 IL5RAQ01344 420 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 SRSF4Q08170 494 aaKnown RBP13.25□□□□□ -0.29
CLN3-229ENST00000567963 SNCBQ16143 134 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 OLFML2AQ68BL7 652 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 VMO1Q7Z5L0 202 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.25□□□□□ -0.29
CLN3-229ENST00000567963 PDZD9Q8IXQ8 264 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 FTMTQ8N4E7 242 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 SCCPDHQ8NBX0 429 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 OTOSQ8NHW6 89 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 THEM6Q8WUY1 208 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 WFDC12Q8WWY7 111 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 DYRK2Q92630 601 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 LRGUKQ96M69 825 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 DMRTB1Q96MA1 342 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 CCT8L2Q96SF2 557 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 PRPF19Q9UMS4 504 aaKnown RBP13.25□□□□□ -0.29
CLN3-229ENST00000567963 MPC1Q9Y5U8 109 aa13.25□□□□□ -0.29
CLN3-229ENST00000567963 A0A1B0GVI7 797 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 ANXA2P2A6NMY6 339 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 PRR23D1E9PI22 279 aaPredicted RBP13.24□□□□□ -0.29
CLN3-229ENST00000567963 ACOT8O14734 319 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 GPR37O15354 613 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 PRR23D2P0DMB1 279 aaPredicted RBP13.24□□□□□ -0.29
CLN3-229ENST00000567963 AMY2BP19961 511 aa13.24□□□□□ -0.29
CLN3-229ENST00000567963 IER3P46695 156 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms