RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 CYSLTR2Q9NS75 346 aa11.48□□□□□ -0.57
CLK3-218ENST00000566926 CENPMQ9NSP4 180 aa11.48□□□□□ -0.57
CLK3-218ENST00000566926 MYEF2Q9P2K5 600 aaKnown RBP11.48□□□□□ -0.57
CLK3-218ENST00000566926 CGGBP1Q9UFW8 167 aaPredicted RBP11.48□□□□□ -0.57
CLK3-218ENST00000566926 ZNF281Q9Y2X9 895 aa11.48□□□□□ -0.57
CLK3-218ENST00000566926 SF3B6Q9Y3B4 125 aaKnown RBP11.48□□□□□ -0.57
CLK3-218ENST00000566926 NIPBLQ6KC79 2804 aaeCLIP11.47□□□□□ -0.57
CLK3-218ENST00000566926 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.47□□□□□ -0.571e-6■■□□□ 12.5
CLK3-218ENST00000566926 LOC100506127A0A0U1RQW1 187 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 PLSCR5A0PG75 271 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 C17orf100A8MU93 164 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 PRR32B1ATL7 298 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 VWC2LB2RUY7 222 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 E9PI62 339 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 LOC110117498-PIK3R3F6TDL0 507 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 RPP14O95059 124 aaKnown RBP11.47□□□□□ -0.57
CLK3-218ENST00000566926 UBCP0CG48 685 aaKnown RBP11.47□□□□□ -0.57
CLK3-218ENST00000566926 NR4A2P43354 598 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 ERVS71-1P61550 626 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 MRPS11P82912 194 aaKnown RBP11.47□□□□□ -0.57
CLK3-218ENST00000566926 DOC2BQ14184 412 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 CCDC92Q53HC0 331 aaPredicted RBP11.47□□□□□ -0.57
CLK3-218ENST00000566926 FAM209AQ5JX71 171 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 CORO6Q6QEF8 472 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 CFAP77Q6ZQR2 320 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 Q71RC1 249 aaPredicted RBP11.47□□□□□ -0.57
CLK3-218ENST00000566926 ZNF101Q8IZC7 436 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 MAPK1IP1LQ8NDC0 245 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 OR5L1Q8NGL2 311 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 OR5AK2Q8NH90 309 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 SLC25A40Q8TBP6 338 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 MARS2Q96GW9 593 aaKnown RBP11.47□□□□□ -0.57
CLK3-218ENST00000566926 KCNJ15Q99712 375 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 TMED9Q9BVK6 235 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 TTTY10Q9BZA0 68 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 NAA50Q9GZZ1 169 aaKnown RBP11.47□□□□□ -0.57
CLK3-218ENST00000566926 PNRC2Q9NPJ4 139 aaKnown RBP11.47□□□□□ -0.57
CLK3-218ENST00000566926 NKIRAS2Q9NYR9 191 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 GRIP1Q9Y3R0 1128 aa11.47□□□□□ -0.57
CLK3-218ENST00000566926 MALRD1Q5VYJ5 2156 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 TMEM269A0A1B0GVZ9 245 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 PSMD9O00233 223 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 RER1O15258 196 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 GPX5O75715 221 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 ARL6IP5O75915 188 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 ISG15P05161 165 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 NAT2P11245 290 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 GIFP27352 417 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 RPS25P62851 125 aaKnown RBP11.46□□□□□ -0.57
CLK3-218ENST00000566926 SLC3A1Q07837 685 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 ZMAT1Q5H9K5 638 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 RFPL4BQ6ZWI9 263 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 ZFP41Q8N8Y5 198 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 CCDC54Q8NEL0 328 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 KLF14Q8TD94 323 aaPredicted RBP11.46□□□□□ -0.57
CLK3-218ENST00000566926 RDH5Q92781 318 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 ITFG2Q969R8 447 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 DIRC2Q96SL1 478 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 OR2J1Q9GZK6 312 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 OR51E2Q9H255 320 aa11.46□□□□□ -0.57
CLK3-218ENST00000566926 EXOSC4Q9NPD3 245 aaKnown RBP11.46□□□□□ -0.57
CLK3-218ENST00000566926 ZFHX3Q15911 3703 aa11.46□□□□□ -0.58
CLK3-218ENST00000566926 A0A096LNT2 108 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 PNMA8CA0A1B0GUJ8 204 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 OR4C45A6NMZ5 311 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 ZNF879B4DU55 563 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 MAGEB4O15481 346 aaPredicted RBP11.45□□□□□ -0.58
CLK3-218ENST00000566926 CD5LO43866 347 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 SRSF10O75494 262 aaKnown RBP11.45□□□□□ -0.58
CLK3-218ENST00000566926 SC5DO75845 299 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 ZFPL1O95159 310 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 NGFP01138 241 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 ACHEP22303 614 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 OTX1P32242 354 aaPredicted RBP11.45□□□□□ -0.58
CLK3-218ENST00000566926 PSMB10P40306 273 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 SERPINB10P48595 397 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 ZNF81P51508 661 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 TMEM249Q2WGJ8 235 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 ALKBH6Q3KRA9 238 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 SPATA46Q5T0L3 261 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 BCL2L15Q5TBC7 163 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 TMEM244Q5VVB8 128 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 DRAM2Q6UX65 266 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 CATSPERDQ86XM0 798 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 ZNF676Q8N7Q3 588 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 OR10S1Q8NGN2 331 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 GPR148Q8TDV2 347 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 TMEM203Q969S6 136 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 DCSTAMPQ9H295 470 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 CHODLQ9H9P2 273 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 DECR2Q9NUI1 292 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 TXNL4BQ9NX01 149 aaKnown RBP11.45□□□□□ -0.58
CLK3-218ENST00000566926 FAM206AQ9NX38 181 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 FRRS1LQ9P0K9 344 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 NUFIP1Q9UHK0 495 aaKnown RBP11.45□□□□□ -0.58
CLK3-218ENST00000566926 ZNF391Q9UJN7 358 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 OR52A1Q9UKL2 312 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 ZDHHC8Q9ULC8 765 aa11.45□□□□□ -0.58
CLK3-218ENST00000566926 SIRT4Q9Y6E7 314 aaPredicted RBP11.45□□□□□ -0.58
CLK3-218ENST00000566926 DYSFO75923 2080 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms