RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TNFRSF13BO14836 293 aaPredicted RBP17.25■□□□□ 0.35
CLN3-219ENST00000565778 ATP5HO75947 161 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 LHBP01229 141 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 IGHV4-38-2P0DP08 117 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 ESRRGP62508 458 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 UBA52P62987 128 aaKnown RBP17.25■□□□□ 0.35
CLN3-219ENST00000565778 KCTD18Q6PI47 426 aaPredicted RBP17.25■□□□□ 0.35
CLN3-219ENST00000565778 DOK3Q7L591 496 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 C11orf53Q8IXP5 236 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 DACT3Q96B18 629 aaPredicted RBP17.25■□□□□ 0.35
CLN3-219ENST00000565778 DUX5Q96PT3 197 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 MICU1Q9BPX6 476 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 RNPEPL1Q9HAU8 725 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 H2AFY2Q9P0M6 372 aaPredicted RBP17.25■□□□□ 0.35
CLN3-219ENST00000565778 CTSZQ9UBR2 303 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 LRP12Q9Y561 859 aa17.25■□□□□ 0.35
CLN3-219ENST00000565778 IGHV3OR15-7A0A075B7D8 119 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 PSMD9O00233 223 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 ENSAO43768 121 aaKnown RBP17.24■□□□□ 0.35
CLN3-219ENST00000565778 MRPL3P09001 348 aaKnown RBP17.24■□□□□ 0.35
CLN3-219ENST00000565778 FGF12P61328 243 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 IL5RAQ01344 420 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 BAMBIQ13145 260 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 WDR86Q86TI4 376 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 FAM90A1Q86YD7 464 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 LRRC29Q8WV35 223 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 PIGCQ92535 297 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 PRRG3Q9BZD7 231 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 KRT84Q9NSB2 600 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 MPC1Q9Y5U8 109 aa17.24■□□□□ 0.35
CLN3-219ENST00000565778 ZNF850A8MQ14 1090 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 C22orf46C9J442 243 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 CDIPTO14735 213 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 LIPFP07098 398 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 FASP25445 335 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 CFPP27918 469 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 MTNR1AP48039 350 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 PSMA6P60900 246 aaKnown RBP17.23■□□□□ 0.35
CLN3-219ENST00000565778 CSNK2BP67870 215 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 PRDX4Q13162 271 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 ATP6AP1Q15904 470 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 MICBQ29980 383 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 LCN1P1Q5VSP4 162 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 C1orf146Q5VVC0 180 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 DEGS2Q6QHC5 323 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 GALNT4Q8N4A0 578 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 C3orf56Q8N813 242 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 OR8B12Q8NGG6 310 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 LYZL4Q96KX0 146 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 HIST1H2AAQ96QV6 131 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 RTL8AQ9BWD3 113 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 MROQ9BYG7 248 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 ZNF391Q9UJN7 358 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 AP4S1Q9Y587 144 aa17.23■□□□□ 0.35
CLN3-219ENST00000565778 TRAV40A0A0B4J280 105 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 TMEM269A0A1B0GVZ9 245 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 TMPRSS2O15393 492 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 PRKYO43930 277 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 MITFO75030 526 aaPredicted RBP17.22■□□□□ 0.35
CLN3-219ENST00000565778 EGR1P18146 543 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 PRTN3P24158 256 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 ACKR3P25106 362 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 COMPP49747 757 aaPredicted RBP17.22■□□□□ 0.35
CLN3-219ENST00000565778 TUSC1Q2TAM9 212 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 TEX36Q5VZQ5 186 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 WDR82Q6UXN9 313 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 KCTD8Q6ZWB6 473 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 AMIGO2Q86SJ2 522 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 ZDHHC13Q8IUH4 622 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 FAM81AQ8TBF8 368 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 ITPKCQ96DU7 683 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 RNF170Q96K19 258 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 ZNF48Q96MX3 618 aaPredicted RBP17.22■□□□□ 0.35
CLN3-219ENST00000565778 PCGF1Q9BSM1 259 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 SOX21Q9Y651 276 aaPredicted RBP17.22■□□□□ 0.35
CLN3-219ENST00000565778 TMEM14AQ9Y6G1 99 aa17.22■□□□□ 0.35
CLN3-219ENST00000565778 CCDC182A6NF36 153 aa17.21■□□□□ 0.35
CLN3-219ENST00000565778 DVL1O14640 695 aa17.21■□□□□ 0.35
CLN3-219ENST00000565778 PLATP00750 562 aa17.21■□□□□ 0.35
CLN3-219ENST00000565778 CST4P01036 141 aa17.21■□□□□ 0.35
CLN3-219ENST00000565778 MUC1P15941 1255 aaPredicted RBP17.21■□□□□ 0.35
CLN3-219ENST00000565778 MAP2K3P46734 347 aa17.21■□□□□ 0.35
CLN3-219ENST00000565778 MEPCEQ7L2J0 689 aaKnown RBP17.21■□□□□ 0.35
CLN3-219ENST00000565778 BCDIN3DQ7Z5W3 292 aaKnown RBP17.21■□□□□ 0.35
CLN3-219ENST00000565778 TCEANCQ8N8B7 351 aa17.21■□□□□ 0.35
CLN3-219ENST00000565778 PNLDC1Q8NA58 520 aaKnown RBP17.21■□□□□ 0.35
CLN3-219ENST00000565778 ASB17Q8WXJ9 295 aa17.21■□□□□ 0.35
CLN3-219ENST00000565778 CCL13Q99616 98 aa17.21■□□□□ 0.35
CLN3-219ENST00000565778 SMURF1Q9HCE7 757 aa17.21■□□□□ 0.35
CLN3-219ENST00000565778 ABCB9Q9NP78 766 aa17.21■□□□□ 0.35
CLN3-219ENST00000565778 DNAJC9-AS1A6NH13 148 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 ACOD1A6NK06 481 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 ZNF879B4DU55 563 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 ZNF254O75437 659 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 TOX4O94842 621 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 CFHR2P36980 270 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 GMFBP60983 142 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 GPR157Q5UAW9 335 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 C9orf139Q6ZV77 190 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 BTN2A1Q7KYR7 527 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms