RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 LHX4Q969G2 390 aa15.48■□□□□ 0.07
CLN3-218ENST00000565688 C12orf43Q96C57 262 aaKnown RBP15.48■□□□□ 0.07
CLN3-218ENST00000565688 DMRTB1Q96MA1 342 aa15.48■□□□□ 0.07
CLN3-218ENST00000565688 RGCCQ9H4X1 137 aa15.48■□□□□ 0.07
CLN3-218ENST00000565688 CNTD2Q9H8S5 307 aa15.48■□□□□ 0.07
CLN3-218ENST00000565688 RPUSD1Q9UJJ7 312 aaKnown RBP15.48■□□□□ 0.07
CLN3-218ENST00000565688 KPTNQ9Y664 436 aa15.48■□□□□ 0.07
CLN3-218ENST00000565688 GPR37O15354 613 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 GLCEO94923 617 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 PAICSP22234 425 aaKnown RBP15.47■□□□□ 0.07
CLN3-218ENST00000565688 OPRL1P41146 370 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 ZNF121P58317 390 aaPredicted RBP15.47■□□□□ 0.07
CLN3-218ENST00000565688 IL5RAQ01344 420 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 CDONQ4KMG0 1287 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 OLFML2AQ68BL7 652 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 WDR82Q6UXN9 313 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 SLC36A1Q7Z2H8 476 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 WDR86Q86TI4 376 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 SCCPDHQ8NBX0 429 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 OR10G2Q8NGC3 310 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 WFDC12Q8WWY7 111 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 DYRK2Q92630 601 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 OTULINQ96BN8 352 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 NSL1Q96IY1 281 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 PAPOLGQ9BWT3 736 aaKnown RBP15.47■□□□□ 0.07
CLN3-218ENST00000565688 ABCB9Q9NP78 766 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 C1RLQ9NZP8 487 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 DNAJC27Q9NZQ0 273 aa15.47■□□□□ 0.07
CLN3-218ENST00000565688 PRPF19Q9UMS4 504 aaKnown RBP15.47■□□□□ 0.07
CLN3-218ENST00000565688 VWFP04275 2813 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 A0A1B0GVI7 797 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 ARRDC5A6NEK1 342 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 ANXA2P2A6NMY6 339 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 H3BN98 237 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 KCNAB3O43448 404 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 FCN3O75636 299 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 H2BFMP0C1H6 154 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 RAP2AP10114 183 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 POU4F2Q12837 409 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 CMTM4Q8IZR5 234 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 GALNT4Q8N4A0 578 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 KIR3DL3Q8N743 410 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 GIPC3Q8TF64 312 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 PGAM5Q96HS1 289 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 FEVQ99581 238 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 CCL13Q99616 98 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 NIPSNAP1Q9BPW8 284 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 MICU1Q9BPX6 476 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 TLNRD1Q9H1K6 362 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 MED20Q9H944 212 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 RHBDD3Q9Y3P4 386 aa15.46■□□□□ 0.07
CLN3-218ENST00000565688 CLPSL1A2RUU4 121 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 FAM183AA6NL82 134 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 GYS2P54840 703 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 CSNK2BP67870 215 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 OCLNQ16625 522 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 GFOD2Q3B7J2 385 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 WDR38Q5JTN6 314 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 LDLRAD3Q86YD5 345 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.45■□□□□ 0.06
CLN3-218ENST00000565688 TIGD4Q8IY51 512 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 ZNF454Q8N9F8 522 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 LY6G5BQ8NDX9 201 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 LRGUKQ96M69 825 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 RTL8AQ9BWD3 113 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 BRD7Q9NPI1 651 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 MPC1Q9Y5U8 109 aa15.45■□□□□ 0.06
CLN3-218ENST00000565688 TMEM210A6NLX4 147 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.44■□□□□ 0.06
CLN3-218ENST00000565688 NDUFB3O43676 98 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 LYNP07948 512 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 RELBQ01201 579 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 MS4A2Q01362 244 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 KLHL12Q53G59 568 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 METAP1DQ6UB28 335 aaPredicted RBP15.44■□□□□ 0.06
CLN3-218ENST00000565688 VMO1Q7Z5L0 202 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 IQCF1Q8N6M8 205 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 OTOSQ8NHW6 89 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 NPRL2Q8WTW4 380 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 ITPKCQ96DU7 683 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 ASB9Q96DX5 294 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 AMELYQ99218 206 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 DNTTIP1Q9H147 329 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 OR51V1Q9H2C8 321 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 DPAGT1Q9H3H5 408 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 ZNF319Q9P2F9 582 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 ONECUT1Q9UBC0 465 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 ZNF391Q9UJN7 358 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 CAB39Q9Y376 341 aaPredicted RBP15.44■□□□□ 0.06
CLN3-218ENST00000565688 FAM96BQ9Y3D0 163 aa15.44■□□□□ 0.06
CLN3-218ENST00000565688 A0A0U1RQK1 487 aa15.43■□□□□ 0.06
CLN3-218ENST00000565688 PRR23D1E9PI22 279 aaPredicted RBP15.43■□□□□ 0.06
CLN3-218ENST00000565688 CDIPTO14735 213 aa15.43■□□□□ 0.06
CLN3-218ENST00000565688 CST1P01037 141 aa15.43■□□□□ 0.06
CLN3-218ENST00000565688 PRR23D2P0DMB1 279 aaPredicted RBP15.43■□□□□ 0.06
CLN3-218ENST00000565688 HOXB6P17509 224 aaKnown RBP15.43■□□□□ 0.06
CLN3-218ENST00000565688 CALB2P22676 271 aa15.43■□□□□ 0.06
CLN3-218ENST00000565688 IER3P46695 156 aa15.43■□□□□ 0.06
CLN3-218ENST00000565688 LRRC10Q5BKY1 277 aa15.43■□□□□ 0.06
CLN3-218ENST00000565688 ATPAF1Q5TC12 328 aaPredicted RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms