RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 C17orf107Q6ZR85 190 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 DPY19L4Q7Z388 723 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 OR2T29Q8NH02 315 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 C12orf43Q96C57 262 aaKnown RBP14.12□□□□□ -0.15
CLN3-216ENST00000565316 INTS14Q96SY0 518 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 ABHD6Q9BV23 337 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 MUC13Q9H3R2 512 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 ZNF319Q9P2F9 582 aa14.12□□□□□ -0.15
CLN3-216ENST00000565316 A0A0U1RQK1 487 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 DCTN3O75935 186 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 ZNF3P17036 446 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 GSTT1P30711 240 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 IER3P46695 156 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 ZNF121P58317 390 aaPredicted RBP14.11□□□□□ -0.15
CLN3-216ENST00000565316 ELF3P78545 371 aaPredicted RBP14.11□□□□□ -0.15
CLN3-216ENST00000565316 MXRA7P84157 204 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 DEFA6Q01524 100 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 WDR38Q5JTN6 314 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 ATPAF1Q5TC12 328 aaPredicted RBP14.11□□□□□ -0.15
CLN3-216ENST00000565316 FAM57BQ71RH2 274 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 ARHGAP24Q8N264 748 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 FGFRL1Q8N441 504 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 GALNT4Q8N4A0 578 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 CSNK2A3Q8NEV1 391 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 ST8SIA4Q92187 359 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 AMELYQ99218 206 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 CCL13Q99616 98 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 PPP1R3EQ9H7J1 279 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 REEP1Q9H902 201 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 RHBDD3Q9Y3P4 386 aa14.11□□□□□ -0.15
CLN3-216ENST00000565316 SAMHD1Q9Y3Z3 626 aaKnown RBP14.11□□□□□ -0.15
CLN3-216ENST00000565316 A0A1B0GW55 424 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 GPR37O15354 613 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 GPR137BO60478 399 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 IGHV4-59P01825 116 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 DUX4L2P0CJ85 424 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 DUX4L3P0CJ86 424 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 DUX4L4P0CJ87 422 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 DUX4L5P0CJ88 424 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 DUX4L6P0CJ89 424 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 DUX4L7P0CJ90 424 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 HSD11B1P28845 292 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 NAA10P41227 235 aaPredicted RBP14.1□□□□□ -0.15
CLN3-216ENST00000565316 TGM4P49221 684 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 CSNK2BP67870 215 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 GK3PQ14409 553 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 DUX4L9Q6RFH8 374 aaPredicted RBP14.1□□□□□ -0.15
CLN3-216ENST00000565316 METAP1DQ6UB28 335 aaPredicted RBP14.1□□□□□ -0.15
CLN3-216ENST00000565316 SHFQ7M4L6 423 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 ERI1Q8IV48 349 aaKnown RBP14.1□□□□□ -0.15
CLN3-216ENST00000565316 TIGD4Q8IY51 512 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 PIP4P2Q8N4L2 257 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 ITPKCQ96DU7 683 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 OR10A2Q9H208 303 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 RGCCQ9H4X1 137 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 MED20Q9H944 212 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 DUX4Q9UBX2 424 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 U3KQV3 271 aa14.1□□□□□ -0.15
CLN3-216ENST00000565316 A0A1B0GVI7 797 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 ACOT8O14734 319 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 GLCEO94923 617 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 AMY2BP19961 511 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 KRTAP10-3P60369 221 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 MS4A2Q01362 244 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 TRIM25Q14258 630 aaKnown RBP14.09□□□□□ -0.15
CLN3-216ENST00000565316 SNCBQ16143 134 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 STUMQ69YW2 141 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 SLC36A1Q7Z2H8 476 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 VMO1Q7Z5L0 202 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 DHFR2Q86XF0 187 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 FAM216BQ8N7L0 139 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 SCCPDHQ8NBX0 429 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 OR6N2Q8NGY6 317 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 LINC01006Q8NI28 216 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 NPRL2Q8WTW4 380 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 SEH1LQ96EE3 360 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 NIPSNAP1Q9BPW8 284 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 DNTTIP1Q9H147 329 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 DNAJC27Q9NZQ0 273 aa14.09□□□□□ -0.15
CLN3-216ENST00000565316 PRPF19Q9UMS4 504 aaKnown RBP14.09□□□□□ -0.15
CLN3-216ENST00000565316 FAM183AA6NL82 134 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 B2RBV5 119 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 CDIPTO14735 213 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 CLPXO76031 633 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 GNALP38405 381 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 IL5RAQ01344 420 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 FAM98BQ52LJ0 330 aaKnown RBP14.08□□□□□ -0.16
CLN3-216ENST00000565316 FAM76BQ5HYJ3 339 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 BRICD5Q6PL45 260 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 FTMTQ8N4E7 242 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 IQCF1Q8N6M8 205 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 OR10G2Q8NGC3 310 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 OR10Z1Q8NGY1 313 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 C8orf46Q8TAG6 207 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 TEX47Q8TBZ9 253 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 FEVQ99581 238 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 MICU1Q9BPX6 476 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 PAPOLGQ9BWT3 736 aaKnown RBP14.08□□□□□ -0.16
CLN3-216ENST00000565316 HAO2Q9NYQ3 351 aa14.08□□□□□ -0.16
CLN3-216ENST00000565316 RNF114Q9Y508 228 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms