RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 EPHA2P29317 976 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 NAA10P41227 235 aaPredicted RBP12.33□□□□□ -0.44
CLN3-213ENST00000565047 PSMA6P60900 246 aaKnown RBP12.33□□□□□ -0.44
CLN3-213ENST00000565047 ELF3P78545 371 aaPredicted RBP12.33□□□□□ -0.44
CLN3-213ENST00000565047 ATP6AP1Q15904 470 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 DEGS2Q6QHC5 323 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 C12orf54Q6X4T0 127 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 GALNT4Q8N4A0 578 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 CSNK2A3Q8NEV1 391 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 OR8B12Q8NGG6 310 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 OR5K1Q8NHB7 308 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 PGAM5Q96HS1 289 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 YIPF3Q9GZM5 350 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 RASSF4Q9H2L5 321 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 BRD7Q9NPI1 651 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 TRIM36Q9NQ86 728 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 PAPOLBQ9NRJ5 636 aaKnown RBP12.33□□□□□ -0.44
CLN3-213ENST00000565047 FAM206AQ9NX38 181 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 TVP23BQ9NYZ1 205 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 COPS3Q9UNS2 423 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 LRP12Q9Y561 859 aa12.33□□□□□ -0.44
CLN3-213ENST00000565047 TRRAPQ9Y4A5 3859 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 IGHV3OR16-10A0A075B7F0 116 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 TRAV38-1A0A0B4J264 116 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.32□□□□□ -0.44
CLN3-213ENST00000565047 DNAJC9-AS1A6NH13 148 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 CLDN34H7C241 214 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 MITFO75030 526 aaPredicted RBP12.32□□□□□ -0.44
CLN3-213ENST00000565047 GYPAP02724 150 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 DCTDP32321 178 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 FGF12P61328 243 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 CSNK2BP67870 215 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 ROM1Q03395 351 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 MZT1Q08AG7 82 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 POU4F2Q12837 409 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 APOFQ13790 326 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 KCNJ8Q15842 424 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 SNAPC1Q16533 368 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 AADACL4Q5VUY2 407 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 KDM4DQ6B0I6 523 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 BCDIN3DQ7Z5W3 292 aaKnown RBP12.32□□□□□ -0.44
CLN3-213ENST00000565047 HPSE2Q8WWQ2 592 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 OR5P3Q8WZ94 311 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 SEH1LQ96EE3 360 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 TBX15Q96SF7 602 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 NIPAL2Q9H841 368 aa12.32□□□□□ -0.44
CLN3-213ENST00000565047 A0A1B0GW55 424 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 ACOD1A6NK06 481 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 ZAR1LA6NP61 321 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 SRRM5B3KS81 715 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 ZNF879B4DU55 563 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 ADAM20O43506 726 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 SRSF10O75494 262 aaKnown RBP12.31□□□□□ -0.44
CLN3-213ENST00000565047 SFTPBP07988 381 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 DUX4L2P0CJ85 424 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 DUX4L3P0CJ86 424 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 DUX4L4P0CJ87 422 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 DUX4L5P0CJ88 424 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 DUX4L6P0CJ89 424 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 DUX4L7P0CJ90 424 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 HKR1P10072 659 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 ESRRGP62508 458 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 ACTG1P63261 375 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 SLC9A3R2Q15599 337 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 C11orf91Q3C1V1 193 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 SLX4IPQ5VYV7 408 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 C12orf73Q69YU5 71 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 DUX4L9Q6RFH8 374 aaPredicted RBP12.31□□□□□ -0.44
CLN3-213ENST00000565047 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.31□□□□□ -0.44
CLN3-213ENST00000565047 FGFRL1Q8N441 504 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 BOLLQ8N9W6 283 aaKnown RBP12.31□□□□□ -0.44
CLN3-213ENST00000565047 OR8S1Q8NH09 359 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 LRRC29Q8WV35 223 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 GCDHQ92947 438 aaPredicted RBP12.31□□□□□ -0.44
CLN3-213ENST00000565047 ERVK-18Q9QC07 812 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 DUX4Q9UBX2 424 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 ZNF391Q9UJN7 358 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 LAMP5Q9UJQ1 280 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 MPC1Q9Y5U8 109 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 NBEAL1Q6ZS30 2694 aa12.31□□□□□ -0.44
CLN3-213ENST00000565047 IGHV3OR15-7A0A075B7D8 119 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 TRAV40A0A0B4J280 105 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 A0A0U1RQV5 110 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 A6NLC8 198 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 DVL1O14640 695 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 CDIPTO14735 213 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 ENSAO43768 121 aaKnown RBP12.3□□□□□ -0.44
CLN3-213ENST00000565047 LIPFP07098 398 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 RNASE1P07998 156 aaKnown RBP12.3□□□□□ -0.44
CLN3-213ENST00000565047 MUC1P15941 1255 aaPredicted RBP12.3□□□□□ -0.44
CLN3-213ENST00000565047 PRDX4Q13162 271 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 GFOD2Q3B7J2 385 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 AWAT1Q58HT5 328 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 ATPAF1Q5TC12 328 aaPredicted RBP12.3□□□□□ -0.44
CLN3-213ENST00000565047 CD276Q5ZPR3 534 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 LY6G5BQ8NDX9 201 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 PPP1R14AQ96A00 147 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 TECTBQ96PL2 329 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 DUX5Q96PT3 197 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 OR8B4Q96RC9 309 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms