RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 OR13F1Q8NGS4 319 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 OR13C5Q8NGS8 318 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 PP6455Q8WZ26 134 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 PHYHIPQ92561 330 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 SLC30A2Q9BRI3 323 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 TRAF4Q9BUZ4 470 aaPredicted RBP17.62■□□□□ 0.41
CLN3-212ENST00000564574 TMEM100Q9NV29 134 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 MPC1Q9Y5U8 109 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 DSCAMO60469 2012 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 A0A1B0GWJ7 208 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 M0R233 179 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 RAF1P04049 648 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 CD36P16671 472 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 FAHP16930 419 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 TGFBR2P37173 567 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 GNALP38405 381 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 ACSM3Q53FZ2 586 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 CLVS2Q5SYC1 327 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 TMEM42Q69YG0 159 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 ZNF787Q6DD87 383 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 C11orf71Q6IPW1 123 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 CD200R1LQ6Q8B3 271 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 UNQ9370/PRO34162Q6UXP9 181 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 PARP16Q8N5Y8 322 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 OR13G1Q8NGZ3 307 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 FGGYQ96C11 551 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 YIPF6Q96EC8 236 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 DIRC2Q96SL1 478 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 DYNLRB1Q9NP97 96 aa17.61■□□□□ 0.41
CLN3-212ENST00000564574 ARFGEF3Q5TH69 2177 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 TRDV1A0A1B0GX56 115 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 GMDSO60547 372 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 SOX2P48431 317 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 PPOXP50336 477 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 TIMM50Q3ZCQ8 353 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 UTS2BQ765I0 119 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 GPR141Q7Z602 305 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 SERPINA12Q8IW75 414 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 PIGCQ92535 297 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 TMEM203Q969S6 136 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 TMEM106AQ96A25 262 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 ADAT3Q96EY9 351 aaPredicted RBP17.6■□□□□ 0.41
CLN3-212ENST00000564574 TECTBQ96PL2 329 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 OR14A2Q96R54 314 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 PAPOLGQ9BWT3 736 aaKnown RBP17.6■□□□□ 0.41
CLN3-212ENST00000564574 CHST5Q9GZS9 411 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 MS4A5Q9H3V2 200 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 ZDHHC8Q9ULC8 765 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 STUB1Q9UNE7 303 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 RHBDD3Q9Y3P4 386 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 PMF1-BGLAPU3KQ54 211 aa17.6■□□□□ 0.41
CLN3-212ENST00000564574 TRBV5-7A0A0A0MS05 114 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 GABRPO00591 440 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 LMX1BO60663 402 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 LILRA1O75019 489 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 CD8AP01732 235 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 SOD3P08294 240 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 ADH4P08319 380 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 ALDH3B1P43353 468 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 ZNF81P51508 661 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 PRDX4Q13162 271 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 SPERTQ8NA61 448 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 OR5D14Q8NGL3 314 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 DERL3Q96Q80 235 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 LAMP3Q9UQV4 416 aa17.59■□□□□ 0.41
CLN3-212ENST00000564574 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.58■□□□□ 0.4
CLN3-212ENST00000564574 ANKRD61A6NGH8 418 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 ANXA2P2A6NMY6 339 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 ZNF850A8MQ14 1090 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 C17orf100A8MU93 164 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 NRASP01111 189 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 FSTP19883 344 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 CA6P23280 308 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 MAGEB1P43366 347 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 FABP5Q01469 135 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 MZT1Q08AG7 82 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 OR8G1Q15617 311 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 TMEM91Q6ZNR0 172 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 Q6ZR03 302 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 CEACAM19Q7Z692 300 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 ZDHHC23Q8IYP9 409 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 UBASH3BQ8TF42 649 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 HIST1H2AAQ96QV6 131 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 ADAT1Q9BUB4 502 aaKnown RBP17.58■□□□□ 0.4
CLN3-212ENST00000564574 ZCCHC4Q9H5U6 513 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 NEK6Q9HC98 313 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 MSL2Q9HCI7 577 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 SSR3Q9UNL2 185 aa17.58■□□□□ 0.4
CLN3-212ENST00000564574 ZSCAN5BA6NJL1 495 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 GPX5O75715 221 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 ARL6IP5O75915 188 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 ALX3O95076 343 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 UCHL1P09936 223 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 TNFSF4P23510 183 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 FGF9P31371 208 aaPredicted RBP17.57■□□□□ 0.4
CLN3-212ENST00000564574 CRYBB2P43320 205 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 CNN3Q15417 329 aaKnown RBP17.57■□□□□ 0.4
CLN3-212ENST00000564574 GDPGP1Q6ZNW5 385 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 MOB3CQ70IA8 216 aa17.57■□□□□ 0.4
CLN3-212ENST00000564574 TMIGD2Q96BF3 282 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms