RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 OR5AS1Q8N127 324 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 RXFP4Q8TDU9 374 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 TMEM234Q8WY98 164 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 TMEM59Q9BXS4 323 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 CHST11Q9NPF2 352 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 LILRA5A6NI73 299 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 RER1O15258 196 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 NDUFS6O75380 124 aaKnown RBP11.68□□□□□ -0.54
CLN3-210ENST00000563874 FBXO24O75426 580 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 RFC3P40938 356 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 AKR1C3P42330 323 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 DHPSP49366 369 aaPredicted RBP11.68□□□□□ -0.54
CLN3-210ENST00000563874 HOXA1P49639 335 aaPredicted RBP11.68□□□□□ -0.54
CLN3-210ENST00000563874 ETV3LQ6ZN32 361 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 OR5H2Q8NGV7 314 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 C1orf147Q96MC9 270 aaPredicted RBP11.68□□□□□ -0.54
CLN3-210ENST00000563874 RTBDNQ9BSG5 229 aaPredicted RBP11.68□□□□□ -0.54
CLN3-210ENST00000563874 PARP12Q9H0J9 701 aaKnown RBP11.68□□□□□ -0.54
CLN3-210ENST00000563874 SERINC1Q9NRX5 453 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 ASH2LQ9UBL3 628 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 LHFPL6Q9Y693 200 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 RHPN2P1A8MT19 583 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 MBTPS2O43462 519 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 TBPP20226 339 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 LPAR6P43657 344 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 DCDP81605 110 aaKnown RBP11.68□□□□□ -0.54
CLN3-210ENST00000563874 NAAAQ02083 359 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 PRSS54Q6PEW0 395 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 ZNF441Q8N8Z8 693 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 OR8B12Q8NGG6 310 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 OR13G1Q8NGZ3 307 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 ZDHHC12Q96GR4 267 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 NRIP2Q9BQI9 281 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 C5orf63A6NC05 138 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 MED6O75586 246 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 OR3A2P47893 321 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 ZNF121P58317 390 aaPredicted RBP11.67□□□□□ -0.54
CLN3-210ENST00000563874 RNF4P78317 190 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 C10orf91Q5T1B1 145 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 MFSD8Q8NHS3 518 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 ZFP57Q9NU63 452 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 MEX3AA1L020 520 aaKnown RBP11.67□□□□□ -0.54
CLN3-210ENST00000563874 EFNA2O43921 213 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 CHRM2P08172 466 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 HOXB1P14653 301 aaPredicted RBP11.67□□□□□ -0.54
CLN3-210ENST00000563874 LAP3P28838 519 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 SMAD4Q13485 552 aaKnown RBP11.67□□□□□ -0.54
CLN3-210ENST00000563874 PNLIPRP3Q17RR3 467 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 GKN2Q86XP6 184 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 SEC11CQ9BY50 192 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 RAB18Q9NP72 206 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 FER1L5A0AVI2 2057 aa11.67□□□□□ -0.54
CLN3-210ENST00000563874 C10orf142B7Z368 130 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 SFTA3P0C7M3 94 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 ZNF17P17021 662 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 CLRN1P58418 232 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 CSNK2A1P68400 391 aaPredicted RBP11.66□□□□□ -0.54
CLN3-210ENST00000563874 AADACL3Q5VUY0 350 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 OR2A2Q6IF42 318 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 ZNF529Q6P280 563 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 FAM57BQ71RH2 274 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 C1QL2Q7Z5L3 287 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 NAA40Q86UY6 237 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 ARRDC1Q8N5I2 433 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 PNLDC1Q8NA58 520 aaKnown RBP11.66□□□□□ -0.54
CLN3-210ENST00000563874 CSNK2A3Q8NEV1 391 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 KCNG3Q8TAE7 436 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 SMIM3Q9BZL3 60 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 EHFQ9NZC4 300 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 RCC2Q9P258 522 aaKnown RBP11.66□□□□□ -0.54
CLN3-210ENST00000563874 B3GAT1Q9P2W7 334 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 SPAG17Q6Q759 2223 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 A0A1W2PNR3 127 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 C9JQL5 133 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 SCGNO76038 276 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 SFTPCP11686 197 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 NME1P15531 152 aaKnown RBP11.66□□□□□ -0.54
CLN3-210ENST00000563874 CD80P33681 288 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 SNU13P55769 128 aaKnown RBP11.66□□□□□ -0.54
CLN3-210ENST00000563874 HSD11B2P80365 405 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 ZP4Q12836 540 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 RSPO4Q2I0M5 234 aaPredicted RBP11.66□□□□□ -0.54
CLN3-210ENST00000563874 VAX1Q5SQQ9 334 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 OR2AJ1Q8NGZ0 328 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 GLYATL2Q8WU03 294 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 CDC6Q99741 560 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 SLC5A7Q9GZV3 580 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 SLC26A1Q9H2B4 701 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 TAF9BQ9HBM6 251 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 BIN3Q9NQY0 253 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 LIPT2A6NK58 231 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 CSTBP04080 98 aaKnown RBP11.66□□□□□ -0.54
CLN3-210ENST00000563874 CFHR1Q03591 330 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 MYBPHQ13203 477 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 OR51T1Q8NGJ9 327 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 ADAMTS17Q8TE56 1095 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 DDIT4LQ96D03 193 aa11.66□□□□□ -0.54
CLN3-210ENST00000563874 MRPL38Q96DV4 380 aaKnown RBP11.66□□□□□ -0.54
CLN3-210ENST00000563874 LIN37Q96GY3 246 aaPredicted RBP11.66□□□□□ -0.54
CLN3-210ENST00000563874 COA4Q9NYJ1 87 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms