RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 MPPED2Q15777 294 aa11.24□□□□□ -0.61
CLK3-213ENST00000563842 ZIK1Q3SY52 487 aaPredicted RBP11.24□□□□□ -0.61
CLK3-213ENST00000563842 ZNF404Q494X3 552 aa11.24□□□□□ -0.61
CLK3-213ENST00000563842 SLC25A30Q5SVS4 291 aa11.24□□□□□ -0.61
CLK3-213ENST00000563842 IL17RELQ6ZVW7 336 aa11.24□□□□□ -0.61
CLK3-213ENST00000563842 ZNF771Q7L3S4 317 aaPredicted RBP11.24□□□□□ -0.61
CLK3-213ENST00000563842 COMMD2Q86X83 199 aa11.24□□□□□ -0.61
CLK3-213ENST00000563842 NEIL1Q96FI4 390 aaPredicted RBP11.24□□□□□ -0.61
CLK3-213ENST00000563842 HIST1H2AAQ96QV6 131 aa11.24□□□□□ -0.61
CLK3-213ENST00000563842 MYCBPQ99417 103 aaPredicted RBP11.24□□□□□ -0.61
CLK3-213ENST00000563842 RTL8AQ9BWD3 113 aa11.24□□□□□ -0.61
CLK3-213ENST00000563842 PBOV1Q9GZY1 135 aa11.24□□□□□ -0.61
CLK3-213ENST00000563842 RNPEPL1Q9HAU8 725 aa11.24□□□□□ -0.61
CLK3-213ENST00000563842 G6PC2Q9NQR9 355 aa11.24□□□□□ -0.61
CLK3-213ENST00000563842 NUFIP1Q9UHK0 495 aaKnown RBP11.24□□□□□ -0.61
CLK3-213ENST00000563842 POLR3KQ9Y2Y1 108 aaPredicted RBP11.24□□□□□ -0.61
CLK3-213ENST00000563842 TRAV38-1A0A0B4J264 116 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 ZNF816-ZNF321PA0A0X1KG74 233 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 hCG_1807616A0A1W2PRN6 198 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 TMEM210A6NLX4 147 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 A8MXK9 166 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 LOC110117498-PIK3R3F6TDL0 507 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 NDUFA2O43678 99 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 WNT2P09544 360 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 RPS2P15880 293 aaKnown RBP11.23□□□□□ -0.61
CLK3-213ENST00000563842 LCN2P80188 198 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 OCLNQ16625 522 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 ZSCAN26Q16670 478 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 DCDC5Q6ZRR9 648 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 THAP5Q7Z6K1 395 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 GALNT4Q8N4A0 578 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 OR8B3Q8NGG8 313 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 DVL3Q92997 716 aaPredicted RBP11.23□□□□□ -0.61
CLK3-213ENST00000563842 OR8B2Q96RD0 313 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 APOL4Q9BPW4 351 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 TMEM246Q9BRR3 403 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 TTTY10Q9BZA0 68 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 C1orf123Q9NWV4 160 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 OR5V1Q9UGF6 321 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 METRNQ9UJH8 293 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 GTF2A1LQ9UNN4 478 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 RHBDD3Q9Y3P4 386 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 PCDHGB1Q9Y5G3 927 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 GMPPBQ9Y5P6 360 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 SNX5Q9Y5X3 404 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 R4GMQ9 66 aa11.23□□□□□ -0.61
CLK3-213ENST00000563842 ATRQ13535 2644 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 KIAA1324LA8MWY0 1029 aaPredicted RBP11.22□□□□□ -0.61
CLK3-213ENST00000563842 LGALS8O00214 317 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 SULT1C4O75897 302 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 ZNF205O95201 554 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 MTNR1AP48039 350 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 GNB2P62879 340 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 ACTC1P68032 377 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 ACTA1P68133 377 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 RIPPLY1Q0D2K3 151 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 PRDX4Q13162 271 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 BCL2L15Q5TBC7 163 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 ZBTB37Q5TC79 503 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 PLEKHG7Q6ZR37 379 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 KRT74Q7RTS7 529 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 ZDHHC23Q8IYP9 409 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 YIPF7Q8N8F6 280 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 SEMA6DQ8NFY4 1073 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 OR1M1Q8NGA1 313 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 OR10H4Q8NGA5 316 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 PIGCQ92535 297 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 LYZL4Q96KX0 146 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 Q96MT0 163 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 RDH12Q96NR8 316 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 TBX5Q99593 518 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 SSBP3Q9BWW4 388 aaPredicted RBP11.22□□□□□ -0.61
CLK3-213ENST00000563842 GPR84Q9NQS5 396 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 C8orf4Q9NR00 106 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 OR52A1Q9UKL2 312 aa11.22□□□□□ -0.61
CLK3-213ENST00000563842 MXRA5Q9NR99 2828 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 A0A1W2PQL4 384 aaPredicted RBP11.21□□□□□ -0.61
CLK3-213ENST00000563842 METTL15A6NJ78 407 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 ZNF850A8MQ14 1090 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 PRR32B1ATL7 298 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 E9PQ18 207 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 DHRS3O75911 302 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 IGLV3-1P01715 115 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 ACKR3P25106 362 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 NPY4RP50391 375 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 HNRNPA0Q13151 305 aaKnown RBP11.21□□□□□ -0.61
CLK3-213ENST00000563842 FAM201AQ5SY85 155 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 KCTD8Q6ZWB6 473 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 FAM220AQ7Z4H9 259 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 KCTD20Q7Z5Y7 419 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 ELMOD2Q8IZ81 293 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 RFLNBQ8N5W9 214 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 BOLLQ8N9W6 283 aaKnown RBP11.21□□□□□ -0.61
CLK3-213ENST00000563842 ZNF555Q8NEP9 628 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 NANPQ8TBE9 248 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 OR51E1Q8TCB6 317 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 OR5P3Q8WZ94 311 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 ITPKCQ96DU7 683 aa11.21□□□□□ -0.61
CLK3-213ENST00000563842 MRPL48Q96GC5 212 aaKnown RBP11.21□□□□□ -0.61
CLK3-213ENST00000563842 RNF170Q96K19 258 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms