RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TNFAIP6P98066 277 aaPredicted RBP18.47■□□□□ 0.55
SNX1-210ENST00000560260 DNM1P46Q6ZS02 220 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 KRT74Q7RTS7 529 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 PRSS48Q7RTY5 328 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 TGIF2LYQ8IUE0 185 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 CSNK2A3Q8NEV1 391 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 SEMA6DQ8NFY4 1073 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 ITLN1Q8WWA0 313 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 RGP1Q92546 391 aaPredicted RBP18.47■□□□□ 0.55
SNX1-210ENST00000560260 YIPF5Q969M3 257 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 DIRC2Q96SL1 478 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 CCDC90BQ9GZT6 254 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 ERGIC3Q9Y282 383 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 CACNG2Q9Y698 323 aa18.47■□□□□ 0.55
SNX1-210ENST00000560260 ANKRD30BLA7E2S9 258 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 SYT7O43581 403 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 CST4P01036 141 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 ISG15P05161 165 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 DAOP14920 347 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 ACHEP22303 614 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 CDH15P55291 814 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 RPL22L1Q6P5R6 122 aaKnown RBP18.46■□□□□ 0.55
SNX1-210ENST00000560260 ZNF676Q8N7Q3 588 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 WFDC11Q8NEX6 87 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 OR51A4Q8NGJ6 313 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 HAVCR2Q8TDQ0 301 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 UBASH3BQ8TF42 649 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 MEGF10Q96KG7 1140 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 OR2V2Q96R30 315 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 PAPOLGQ9BWT3 736 aaKnown RBP18.46■□□□□ 0.55
SNX1-210ENST00000560260 MND1Q9BWT6 205 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 SAP30LQ9HAJ7 183 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 TRIM36Q9NQ86 728 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 PIGLQ9Y2B2 252 aa18.46■□□□□ 0.55
SNX1-210ENST00000560260 TANC2Q9HCD6 1990 aa18.45■□□□□ 0.54
SNX1-210ENST00000560260 TRBV2A0A0J9YWF9 115 aa18.45■□□□□ 0.54
SNX1-210ENST00000560260 IGHV3-64DA0A0J9YX35 117 aa18.45■□□□□ 0.54
SNX1-210ENST00000560260 A6NIN4 97 aa18.45■□□□□ 0.54
SNX1-210ENST00000560260 ERCC1P07992 297 aaPredicted RBP18.45■□□□□ 0.54
SNX1-210ENST00000560260 EEF1B2P24534 225 aaKnown RBP18.45■□□□□ 0.54
SNX1-210ENST00000560260 RIPPLY1Q0D2K3 151 aa18.45■□□□□ 0.54
SNX1-210ENST00000560260 PRDX4Q13162 271 aa18.45■□□□□ 0.54
SNX1-210ENST00000560260 MAB21L1Q13394 359 aa18.45■□□□□ 0.54
SNX1-210ENST00000560260 OR8G1Q15617 311 aa18.45■□□□□ 0.54
SNX1-210ENST00000560260 CCDC58Q4VC31 144 aa18.45■□□□□ 0.54
SNX1-210ENST00000560260 TMEM244Q5VVB8 128 aa18.45■□□□□ 0.54
SNX1-210ENST00000560260 DMKNQ6E0U4 476 aaPredicted RBP18.45■□□□□ 0.54
SNX1-210ENST00000560260 HPSE2Q8WWQ2 592 aa18.45■□□□□ 0.54
SNX1-210ENST00000560260 ZNF816-ZNF321PA0A0X1KG74 233 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 ZNF850A8MQ14 1090 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 TPD52L2O43399 206 aaKnown RBP18.44■□□□□ 0.54
SNX1-210ENST00000560260 CDC14BO60729 498 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 MTRF1O75570 445 aaKnown RBP18.44■□□□□ 0.54
SNX1-210ENST00000560260 RP2O75695 350 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 COL8A2P25067 703 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 CD200P41217 278 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 DMRTC1Q5HYR2 192 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 WDR86Q86TI4 376 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 OR5AK2Q8NH90 309 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 ITPKCQ96DU7 683 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 SMIM19Q96E16 107 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 PGLYRP3Q96LB9 341 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 YTHDF1Q9BYJ9 559 aaKnown RBP18.44■□□□□ 0.54
SNX1-210ENST00000560260 SLC22A4Q9H015 551 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 DECR2Q9NUI1 292 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 DCAF16Q9NXF7 216 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 IL19Q9UHD0 177 aa18.44■□□□□ 0.54
SNX1-210ENST00000560260 PNMA8CA0A1B0GUJ8 204 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 TMEM212A6NML5 194 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 SLC3A1Q07837 685 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 TBCEQ15813 527 aaPredicted RBP18.43■□□□□ 0.54
SNX1-210ENST00000560260 CLEC12BQ2HXU8 276 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 ZBTB37Q5TC79 503 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 PRAMEF6Q5VXH4 476 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 TMEM42Q69YG0 159 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 PRSS57Q6UWY2 283 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 OR13C5Q8NGS8 318 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 PIGCQ92535 297 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 ADAT3Q96EY9 351 aaPredicted RBP18.43■□□□□ 0.54
SNX1-210ENST00000560260 TREM2Q9NZC2 230 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 ENPP5Q9UJA9 477 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 HHLA2Q9UM44 414 aa18.43■□□□□ 0.54
SNX1-210ENST00000560260 MAST4O15021 2626 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 MAP1AP78559 2803 aaPredicted RBP18.42■□□□□ 0.54
SNX1-210ENST00000560260 LOC100289279A0A1B0GTE1 492 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 TRIM64A6NGJ6 449 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 DHRS7CA6NNS2 312 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 GMDSO60547 372 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 TNFSF4P23510 183 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 ACSM1Q08AH1 577 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 SPHARQ15513 63 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 SHEQ5VZ18 495 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 ZDHHC23Q8IYP9 409 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 RDH5Q92781 318 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 ITFG2Q969R8 447 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 Q96MF0 132 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 EGLN1Q9GZT9 426 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 GPR173Q9NS66 373 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 LRCH1Q9Y2L9 728 aa18.42■□□□□ 0.54
SNX1-210ENST00000560260 MPC1Q9Y5U8 109 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms