RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 DCKP27707 260 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 IL2RGP31785 369 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 DDOSTP39656 456 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 MTNR1AP48039 350 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 SRP9P49458 86 aaKnown RBP7.91□□□□□ -1.14
LDLR-211ENST00000560173 GSK3AP49840 483 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 MMP16P51512 607 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 RIDAP52758 137 aaKnown RBP7.91□□□□□ -1.14
LDLR-211ENST00000560173 FAM3AP98173 230 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 EGR3Q06889 387 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 MFGE8Q08431 387 aaPredicted RBP7.91□□□□□ -1.14
LDLR-211ENST00000560173 HNRNPA0Q13151 305 aaKnown RBP7.91□□□□□ -1.14
LDLR-211ENST00000560173 OR8B8Q15620 311 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 CNPY1Q3B7I2 92 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 GFOD2Q3B7J2 385 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 ZNF829Q3KNS6 432 aaPredicted RBP7.91□□□□□ -1.14
LDLR-211ENST00000560173 ZNF684Q5T5D7 378 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 SYT6Q5T7P8 510 aaPredicted RBP7.91□□□□□ -1.14
LDLR-211ENST00000560173 LAIR2Q6ISS4 152 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 AHSA2Q719I0 299 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 SSX6Q7RTT6 188 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 CLVS1Q8IUQ0 354 aaPredicted RBP7.91□□□□□ -1.14
LDLR-211ENST00000560173 OR10H4Q8NGA5 316 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 OR2T27Q8NH04 317 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 APH1BQ8WW43 257 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 CCL17Q92583 94 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 HPS1Q92902 700 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 RNFT2Q96EX2 444 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 LYZL4Q96KX0 146 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 TBX5Q99593 518 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 CDCA4Q9BXL8 241 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 SLC22A4Q9H015 551 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 CHCHD3Q9NX63 227 aaKnown RBP7.91□□□□□ -1.14
LDLR-211ENST00000560173 DCAF16Q9NXF7 216 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 TREM2Q9NZC2 230 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 AASSQ9UDR5 926 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 NUFIP1Q9UHK0 495 aaKnown RBP7.91□□□□□ -1.14
LDLR-211ENST00000560173 NOP16Q9Y3C1 178 aaKnown RBP7.91□□□□□ -1.14
LDLR-211ENST00000560173 CEPT1Q9Y6K0 416 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 TANC2Q9HCD6 1990 aa7.91□□□□□ -1.14
LDLR-211ENST00000560173 MALRD1Q5VYJ5 2156 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 YLPM1P49750 1951 aaKnown RBP7.9□□□□□ -1.14
LDLR-211ENST00000560173 A0A0U1RQV5 110 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 TMEM269A0A1B0GVZ9 245 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 A0A1W2PQL4 384 aaPredicted RBP7.9□□□□□ -1.14
LDLR-211ENST00000560173 J3QRE1 110 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 WNT9BO14905 357 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 GMDSO60547 372 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 SRSF10O75494 262 aaKnown RBP7.9□□□□□ -1.14
LDLR-211ENST00000560173 PTBP3O95758 552 aaKnown RBP7.9□□□□□ -1.14
LDLR-211ENST00000560173 PNPP00491 289 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 ZNF16P17020 682 aaPredicted RBP7.9□□□□□ -1.14
LDLR-211ENST00000560173 PCMT1P22061 227 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 ATP6V1E1P36543 226 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 CD200P41217 278 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 GATA4P43694 442 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 GZMKP49863 264 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 ZNF85Q03923 595 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 EMX1Q04741 257 aaPredicted RBP7.9□□□□□ -1.14
LDLR-211ENST00000560173 ZNF91Q05481 1191 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 SLC3A1Q07837 685 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 MAB21L1Q13394 359 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 OR8G1Q15617 311 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 TIMM50Q3ZCQ8 353 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 AVPI1Q5T686 147 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 UBE2UQ5VVX9 321 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 FOXB2Q5VYV0 432 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 XAF1Q6GPH4 301 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 ZNF367Q7RTV3 350 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 KLBQ86Z14 1044 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 CELF2-AS1Q8N7Q2 184 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 CLDND2Q8NHS1 167 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 GGHQ92820 318 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 RAB1CQ92928 201 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 DVL3Q92997 716 aaPredicted RBP7.9□□□□□ -1.14
LDLR-211ENST00000560173 TIMD4Q96H15 378 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 C1orf159Q96HA4 380 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 SIGLEC11Q96RL6 698 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 SOX7Q9BT81 388 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 ADAT1Q9BUB4 502 aaKnown RBP7.9□□□□□ -1.14
LDLR-211ENST00000560173 PBOV1Q9GZY1 135 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 NARFLQ9H6Q4 476 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 MOB1AQ9H8S9 216 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 GCM1Q9NP62 436 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 ACOT13Q9NPJ3 140 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 TMEM106BQ9NUM4 274 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 ERVK-18Q9QC07 812 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 ZNF391Q9UJN7 358 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 PPP1R3CQ9UQK1 317 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 ERGIC3Q9Y282 383 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 WIPI2Q9Y4P8 454 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 R4GMQ9 66 aa7.9□□□□□ -1.14
LDLR-211ENST00000560173 COL6A5A8TX70 2615 aa7.9□□□□□ -1.15
LDLR-211ENST00000560173 IGHV3-64DA0A0J9YX35 117 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 METTL15A6NJ78 407 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 ANKRD30BLA7E2S9 258 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 IFNL4K9M1U5 179 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 SULT1C4O75897 302 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 IGLV3-1P01715 115 aa7.89□□□□□ -1.15
LDLR-211ENST00000560173 IGHV2-70P01814 119 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms