RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GPR84Q9NQS5 396 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 NXT1Q9UKK6 140 aaKnown RBP10.07□□□□□ -0.8
LDLR-208ENST00000558518 PQLC2LA1A4F0 135 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 FAM221BA6H8Z2 402 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 TNFP01375 233 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 IFNA2P01563 188 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 IFNA21P01568 189 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 CA3P07451 260 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 FBP1P09467 338 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 PGCP20142 388 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 HNRNPA2B1P22626 353 aaKnown RBP10.07□□□□□ -0.8
LDLR-208ENST00000558518 GLP1RP43220 463 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 DEFA6Q01524 100 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 ABCA11PQ4W5N1 156 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 ZNF343Q6P1L6 599 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 PRSS54Q6PEW0 395 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 ZNF440Q8IYI8 595 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 ZNF561Q8N587 486 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 TMEM217Q8N7C4 229 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 ERGIC1Q969X5 290 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 DOCK7Q96N67 2140 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 GPHA2Q96T91 129 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 PBOV1Q9GZY1 135 aa10.07□□□□□ -0.8
LDLR-208ENST00000558518 DUSP15Q9H1R2 295 aaPredicted RBP10.07□□□□□ -0.8
LDLR-208ENST00000558518 ABCA7Q8IZY2 2146 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 STMND1H3BQB6 276 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 PLRG1O43660 514 aaKnown RBP10.06□□□□□ -0.8
LDLR-208ENST00000558518 CD79AP11912 226 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 NOVA1P51513 510 aaKnown RBP10.06□□□□□ -0.8
LDLR-208ENST00000558518 ZNF600Q6ZNG1 722 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 OR5L1Q8NGL2 311 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 MRPL24Q96A35 216 aaKnown RBP10.06□□□□□ -0.8
LDLR-208ENST00000558518 ELSPBP1Q96BH3 223 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 ZNF2Q9BSG1 426 aaPredicted RBP10.06□□□□□ -0.8
LDLR-208ENST00000558518 SUCNR1Q9BXA5 334 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 CNTNAP3Q9BZ76 1288 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 SLC2A8Q9NY64 477 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 CYP8B1Q9UNU6 501 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 CARHSP1Q9Y2V2 147 aaKnown RBP10.06□□□□□ -0.8
LDLR-208ENST00000558518 MEMO1Q9Y316 297 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 KLF2Q9Y5W3 355 aaPredicted RBP10.06□□□□□ -0.8
LDLR-208ENST00000558518 NPIPB9F8W1W9 429 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 RER1O15258 196 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 ZNHIT1O43257 154 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 FGF16O43320 207 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 OR2C1O95371 312 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 SFT2D2O95562 160 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 TMEM225BP0DP42 221 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 RAB5AP20339 215 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 CRABP1P29762 137 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 HAAOP46952 286 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 PLAC9Q5JTB6 97 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 OGFOD3Q6PK18 319 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 PLXDC2Q6UX71 529 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 IL34Q6ZMJ4 242 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 C6orf201Q7Z4U5 140 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 SULF2Q8IWU5 870 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 LRRC18Q8N456 261 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 OR10D4PQ8NGN7 298 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 RARRES2Q99969 163 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 ARHGAP21Q5T5U3 1957 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 RALGAPA1Q6GYQ0 2036 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 A0A1W2PNR3 127 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 TCRBV21S2A2A0A5A6 115 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 ANGPTL7O43827 346 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 EIF1BO60739 113 aaKnown RBP10.06□□□□□ -0.8
LDLR-208ENST00000558518 EIF1P41567 113 aaKnown RBP10.06□□□□□ -0.8
LDLR-208ENST00000558518 CX3CR1P49238 355 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 KIAA2026Q5HYC2 2103 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 ZDHHC22Q8N966 263 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 ZFP62Q8NB50 900 aaPredicted RBP10.06□□□□□ -0.8
LDLR-208ENST00000558518 C11orf40Q8WZ69 217 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 AQP3Q92482 292 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 TMEM230Q96A57 120 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 C2orf50Q96LR7 162 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 MAGT1Q9H0U3 335 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 TXNIPQ9H3M7 391 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 KNTC1P50748 2209 aa10.06□□□□□ -0.8
LDLR-208ENST00000558518 CSTBP04080 98 aaKnown RBP10.05□□□□□ -0.8
LDLR-208ENST00000558518 PET100P0DJ07 73 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 ACKR3P25106 362 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 SULT1A1P50225 295 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 TAS2R31P59538 309 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 OR2B11Q5JQS5 317 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 WDFY1Q8IWB7 410 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 SLC43A2Q8N370 569 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 C8orf44Q96CB5 159 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 MEGF10Q96KG7 1140 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 PAPOLGQ9BWT3 736 aaKnown RBP10.05□□□□□ -0.8
LDLR-208ENST00000558518 SLCO1B1Q9Y6L6 691 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 SVILO95425 2214 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 CXorf65A6NEN9 183 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 TTRP02766 147 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 S100A8P05109 93 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 KLK2P20151 261 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 S100PP25815 95 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 CLRN1P58418 232 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 EIF5AP63241 154 aaKnown RBP10.05□□□□□ -0.8
LDLR-208ENST00000558518 S100A12P80511 92 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 OR13G1Q8NGZ3 307 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms