RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 RBM45Q8IUH3 476 aaKnown RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 MICU2Q8IYU8 434 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 LRRC75A-AS1Q8N1F1 130 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 UBL4BQ8N7F7 174 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 RNASE8Q8TDE3 154 aaKnown RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 CT55Q8WUE5 264 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 KCTD4Q8WVF5 259 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 PNPLA2Q96AD5 504 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 PRRT1Q99946 306 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 PIGUQ9H490 435 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 IKZF5Q9H5V7 419 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 GEMIN7Q9H840 131 aaKnown RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 GPN2Q9H9Y4 310 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-209ENST00000556353 FBXO8Q9NRD0 319 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 RBM22Q9NW64 420 aaKnown RBP eCLIP3.31□□□□□ -1.883e-6■■■□□ 18.5
PRPF39-209ENST00000556353 CD274Q9NZQ7 290 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 TBC1D24Q9ULP9 559 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 TFR2Q9UP52 801 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 MGAT4BQ9UQ53 548 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 NUBP2Q9Y5Y2 271 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 STAB1Q9NY15 2570 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 MPDZO75970 2070 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 EXPH5Q8NEV8 1989 aa3.31□□□□□ -1.88
PRPF39-209ENST00000556353 ROS1P08922 2347 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 A0A0J9YVX5 310 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 PCP4L1A6NKN8 68 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 TMEM238C9JI98 176 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 M0QZK8 103 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 CCL22O00626 93 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 TOR1AO14656 332 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 SCAMP2O15127 329 aaKnown RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 PFDN6O15212 129 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 STX7O15400 261 aaKnown RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 ST8SIA3O43173 380 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 RNF13O43567 381 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 LANCL1O43813 399 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 CST8O60676 142 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 CCNKO75909 580 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 DUSP14O95147 198 aaKnown RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 FCER2P06734 321 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 CRHP06850 196 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 LINC00614P0C842 121 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 FOLR1P15328 257 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 ATP6V1C1P21283 382 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 KDELR1P24390 212 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 S100PP25815 95 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 G0S2P27469 103 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 HTR2AP28223 471 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 IL12BP29460 328 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 MAS1LP35410 378 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 DLSTP36957 453 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 CDKN2BP42772 138 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 MAGEB1P43366 347 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 RGS8P57771 180 aaPredicted RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 RPL26P61254 145 aaKnown RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 FLI1Q01543 452 aaPredicted RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 RELAQ04206 551 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 CKAP4Q07065 602 aaKnown RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 BST1Q10588 318 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 MEF2DQ14814 521 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 TMED2Q15363 201 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 ACKR1Q16570 336 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 LRRC36Q1X8D7 754 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 TRIM16LQ309B1 348 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 DEFB109BQ30KR1 87 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 C18orf21Q32NC0 220 aaPredicted RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 KLHL12Q53G59 568 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 ACER2Q5QJU3 275 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 LDLRAP1Q5SW96 308 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 GPR157Q5UAW9 335 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 RAET1LQ5VY80 246 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 NCR3LG1Q68D85 454 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 FAM199XQ6PEV8 388 aaPredicted RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 PGAP1Q75T13 922 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 PID1Q7Z2X4 250 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 SNX20Q7Z614 316 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 VSTM4Q8IW00 320 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 CYP4Z2PQ8N1L4 340 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 RNF148Q8N7C7 305 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 FAM71CQ8NEG0 241 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 OR52B4Q8NGK2 314 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 OR10G6Q8NH81 332 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 OR2V1Q8NHB1 315 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 OR10J5Q8NHC4 309 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 PNPT1Q8TCS8 783 aaKnown RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 CACNG8Q8WXS5 425 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 GLYATL1Q969I3 302 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 BORCS5Q969J3 196 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 HAUS1Q96CS2 278 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 CCDC124Q96CT7 223 aaKnown RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 DNAJC1Q96KC8 554 aaKnown RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 TGM7Q96PF1 710 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 RNF157Q96PX1 679 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 TEAD3Q99594 435 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 TIMM29Q9BSF4 260 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 ALG12Q9BV10 488 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 ST6GALNAC5Q9BVH7 336 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 ULBP3Q9BZM4 244 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 SLC25A51Q9H1U9 297 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 MEAF6Q9HAF1 191 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms