RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-205	ENST00000556096	KLK11	Q9UBX7	282 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	MTFP1	Q9UDX5	166 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	MRPS28	Q9Y2Q9	187 aa	Known RBP	12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	SPEN	Q96T58	3664 aa	Known RBP	12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	RBBP9	O75884	186 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	HLA-H	P01893	362 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	TRAPPC2	P0DI81	140 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	TRAPPC2B	P0DI82	140 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	PTHLH	P12272	177 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	PRSS3	P35030	304 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	ALDH3B1	P43353	468 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	GSK3A	P49840	483 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	SSBP1	Q04837	148 aa	Known RBP	12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	PMPCA	Q10713	525 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	UNC119	Q13432	240 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	UBE2V2	Q15819	145 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	AWAT2	Q6E213	333 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	OR10K2	Q6IF99	312 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	FAM214B	Q7L5A3	538 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	OR2AE1	Q8NHA4	323 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	BCL2L2	Q92843	193 aa	Predicted RBP	12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	HPS1	Q92902	700 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	ITFG2	Q969R8	447 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	UPRT	Q96BW1	309 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	NUDT16L1	Q9BRJ7	211 aa	Known RBP	12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	TAS2R8	Q9NYW2	309 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	LUZP4	Q9P127	313 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	GHRL	Q9UBU3	117 aa		12.79	□□□□□ -0.36
VPS33B-205	ENST00000556096	LOC100509620	A0A075B734	347 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	BOLA2-SMG1P6	H3BVE0	249 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	CNOT4	O95628	575 aa	Known RBP	12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	CD79A	P11912	226 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	ACKR3	P25106	362 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	HLA-DMA	P28067	261 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	RAB1A	P62820	205 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	TNK1	Q13470	666 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	KISS1	Q15726	138 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	CARTPT	Q16568	116 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	GLIPR1L1	Q6UWM5	242 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	TFAP2E	Q6VUC0	442 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	RNF144B	Q7Z419	303 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	AKAP14	Q86UN6	197 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	PNLDC1	Q8NA58	520 aa	Known RBP	12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	FAM46B	Q96A09	425 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	C1orf147	Q96MC9	270 aa	Predicted RBP	12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	SPACA5	Q96QH8	159 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	CACNG6	Q9BXT2	260 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	SCPEP1	Q9HB40	452 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	NEK6	Q9HC98	313 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	HRASLS	Q9HDD0	168 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	NUBP2	Q9Y5Y2	271 aa		12.78	□□□□□ -0.36
VPS33B-205	ENST00000556096	ATRX	P46100	2492 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	ARHGAP21	Q5T5U3	1957 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	hCG_38984	A0A1B0GV85	526 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	ZNF503-AS2	A6NEH8	195 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	INMT-MINDY4	F8WBC2	141 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	TCRB	P04435	133 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	FAM3A	P98173	230 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	PLP2	Q04941	152 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	FAM189A2	Q15884	450 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	ZBTB37	Q5TC79	503 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	OLFML2A	Q68BL7	652 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	TMEM42	Q69YG0	159 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	OR2A2	Q6IF42	318 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	CRIP3	Q6Q6R5	217 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	KCNG3	Q8TAE7	436 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	GPX8	Q8TED1	209 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	NANOS1	Q8WY41	292 aa	Known RBP	12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	SPSB1	Q96BD6	273 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	GPER1	Q99527	375 aa		12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	MYEF2	Q9P2K5	600 aa	Known RBP	12.77	□□□□□ -0.36
VPS33B-205	ENST00000556096	FREM1	Q5H8C1	2179 aa		12.77	□□□□□ -0.37
VPS33B-205	ENST00000556096		A0A0B4J293	547 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	HMX3	A6NHT5	357 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	RAB27B	O00194	218 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	CRYAB	P02511	175 aa	Known RBP	12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	MT-ND4	P03905	459 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	CHRM2	P08172	466 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	NAT2	P11245	290 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	EDN3	P14138	238 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	STOM	P27105	288 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	GIF	P27352	417 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	OR3A4P	P47883	348 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	RAG2	P55895	527 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	ZNF92	Q03936	586 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	CD300C	Q08708	224 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	SF3B4	Q15427	424 aa	Known RBP eCLIP	12.76	□□□□□ -0.37	2e-6	■■□□□ 11.7
VPS33B-205	ENST00000556096	OR8B8	Q15620	311 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	TATDN3	Q17R31	274 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	ACSF3	Q4G176	576 aa	Predicted RBP	12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	ZNF101	Q8IZC7	436 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	DRAXIN	Q8NBI3	349 aa	Predicted RBP	12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	OR5M9	Q8NGP3	310 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	POM121L2	Q96KW2	1035 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	NOX3	Q9HBY0	568 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	ERVH48-1	M5A8F1	160 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	CSF1	P09603	554 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	PRKACB	P22694	351 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	PTGFR	P43088	359 aa		12.76	□□□□□ -0.37
VPS33B-205	ENST00000556096	TGFBR3	Q03167	851 aa		12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms