RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 SOX7Q9BT81 388 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 C5orf66Q9H5L9 145 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 C12orf4Q9NQ89 552 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 CSAG2Q9Y5P2 127 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 FLVCR1Q9Y5Y0 555 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 U3KQA8 63 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 V9GYS6 101 aa11.89□□□□□ -0.51
SHMT2-222ENST00000555774 SEC16AO15027 2179 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 CEP192Q8TEP8 1941 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 LOC102723996A0A087X1L8 192 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 IGKV1-9A0A0C4DH69 117 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 FOXI3A8MTJ6 420 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-222ENST00000555774 K7ESF4 209 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 CDK2AP1O14519 115 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 EIF1BO60739 113 aaKnown RBP11.88□□□□□ -0.51
SHMT2-222ENST00000555774 VAMP5O95183 116 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 APOC1P02654 83 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 OPN1LWP04000 364 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 NAT2P11245 290 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 AMY2BP19961 511 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 SFTPDP35247 375 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 CLDN17P56750 224 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 H3F3AP84243 136 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 SURF2Q15527 256 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-222ENST00000555774 Q7L0L9 218 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 RNF144BQ7Z419 303 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 OR5AP2Q8NGF4 316 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 RHBDD1Q8TEB9 315 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 PP6455Q8WZ26 134 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 TMEM230Q96A57 120 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 ARHGAP5-AS1Q96IT6 56 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 NELFAQ9H3P2 528 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 BANF2Q9H503 90 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 SERPINE3A8MV23 424 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 FGF16O43320 207 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 RAMP1O60894 148 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 RAD51DO75771 328 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 CXCL12P48061 93 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 HIST1H3AP68431 136 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 ARFRP1Q13795 201 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 PCOLCEQ15113 449 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 PLEKHN1Q494U1 663 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-222ENST00000555774 BEX5Q5H9J7 111 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 HIST2H3PS2Q5TEC6 136 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 HIST2H3AQ71DI3 136 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 RTN4RL2Q86UN3 420 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 SLC30A7Q8NEW0 376 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 DCUN1D4Q92564 292 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 MARC2Q969Z3 335 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 ZNF416Q9BWM5 594 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 TM2D1Q9BX74 207 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 FAM117AQ9C073 453 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 MS4A7Q9GZW8 240 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-222ENST00000555774 OSGIN2Q9Y236 505 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 GON4LQ3T8J9 2241 aa11.88□□□□□ -0.51
SHMT2-222ENST00000555774 C13orf42A0A1B0GVH6 325 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 MPTX1A8MV57 137 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 DHRS3O75911 302 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 APOC3P02656 99 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 FGF5P12034 268 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 CTRB1P17538 263 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 ECI1P42126 302 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 PTGFRP43088 359 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 KISS1Q15726 138 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 CTRB2Q6GPI1 263 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 ELP2Q6IA86 826 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 FAM122CQ6P4D5 195 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 OPN5Q6U736 354 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 CLEC18BQ6UXF7 455 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 SLC16A14Q7RTX9 510 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 ARMC10Q8N2F6 343 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 OR51T1Q8NGJ9 327 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 INTS12Q96CB8 462 aaKnown RBP11.87□□□□□ -0.51
SHMT2-222ENST00000555774 ZNF160Q9HCG1 818 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 ZC4H2Q9NQZ6 224 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 PGAM2P15259 253 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 OR3A2P47893 321 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 NPY4RP50391 375 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 SGCAQ16586 387 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 LCN10Q6JVE6 187 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 PRSS54Q6PEW0 395 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 OR52H1Q8NGJ2 320 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 NAT6Q93015 286 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 NECAB3Q96P71 396 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-222ENST00000555774 NAA11Q9BSU3 229 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-222ENST00000555774 RNF126Q9BV68 326 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 CHST5Q9GZS9 411 aa11.87□□□□□ -0.51
SHMT2-222ENST00000555774 RYDENQ9NUL5 291 aaKnown RBP11.87□□□□□ -0.51
SHMT2-222ENST00000555774 FIGNL2A6NMB9 653 aa11.86□□□□□ -0.51
SHMT2-222ENST00000555774 TPD52L2O43399 206 aaKnown RBP11.86□□□□□ -0.51
SHMT2-222ENST00000555774 PET100P0DJ07 73 aa11.86□□□□□ -0.51
SHMT2-222ENST00000555774 EXT1Q16394 746 aa11.86□□□□□ -0.51
SHMT2-222ENST00000555774 GFOD2Q3B7J2 385 aa11.86□□□□□ -0.51
SHMT2-222ENST00000555774 CCDC157Q569K6 752 aa11.86□□□□□ -0.51
SHMT2-222ENST00000555774 LYSMD4Q5XG99 296 aa11.86□□□□□ -0.51
SHMT2-222ENST00000555774 BPIFCQ8NFQ6 507 aa11.86□□□□□ -0.51
SHMT2-222ENST00000555774 OR13G1Q8NGZ3 307 aa11.86□□□□□ -0.51
SHMT2-222ENST00000555774 SAP25Q8TEE9 199 aa11.86□□□□□ -0.51
SHMT2-222ENST00000555774 LYZL4Q96KX0 146 aa11.86□□□□□ -0.51
SHMT2-222ENST00000555774 RTBDNQ9BSG5 229 aaPredicted RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms