RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 TMEM14AQ9Y6G1 99 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 PPIAL4EA0A075B759 164 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 IGHV3OR15-7A0A075B7D8 119 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 LRRC30A6NM36 301 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 PPIAL4DF5H284 164 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 H3BSH0 61 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 IFNL4K9M1U5 179 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 DLGAP1O14490 977 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 RGS9O75916 674 aaPredicted RBP9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 RPP14O95059 124 aaKnown RBP9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 TTRP02766 147 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 PPIAL4FP0DN26 164 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 ANPEPP15144 967 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 HNF1AP20823 631 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF85Q03923 595 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 ODF4Q2M2E3 257 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF181Q2M3W8 571 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF404Q494X3 552 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF684Q5T5D7 378 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 DCAF12L2Q5VW00 463 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 ZBTB49Q6ZSB9 765 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 KLBQ86Z14 1044 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 GCSAMQ8N6F7 178 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 OR1M1Q8NGA1 313 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 OR11L1Q8NGX0 322 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 HPSE2Q8WWQ2 592 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 PIGCQ92535 297 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 ITPKCQ96DU7 683 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 C9orf16Q9BUW7 83 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 RASSF4Q9H2L5 321 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 RGCCQ9H4X1 137 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 GPR84Q9NQS5 396 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 NUFIP1Q9UHK0 495 aaKnown RBP9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 PPIAL4AQ9Y536 164 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 ORC6Q9Y5N6 252 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 DOCK11Q5JSL3 2073 aa9.68□□□□□ -0.86
CCDC88C-208ENST00000554165 A0A0G2JMP0 313 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 A0A0U1RQV5 110 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 A0A0X1KG70 313 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 A0A1B0GTI1 187 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 hCG_1807616A0A1W2PRN6 198 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 A6NIN4 97 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 LGALS8O00214 317 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 P2RY10O00398 339 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF254O75437 659 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 FCN3O75636 299 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 CST4P01036 141 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 IGLV3-1P01715 115 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 TFF1P04155 84 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 OR2T7P0C7T2 308 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 IRF2P14316 349 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 RPS2P15880 293 aaKnown RBP9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 FAHP16930 419 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 CFL1P23528 166 aaKnown RBP9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 GNALP38405 381 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 PSMB10P40306 273 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 GMFBP60983 142 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 SNRPGP62308 76 aaKnown RBP9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF154Q13106 437 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 LRRC36Q1X8D7 754 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 CEP78Q5JTW2 689 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 COMMD2Q86X83 199 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 C10orf67Q8IYJ2 551 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 C1orf87Q8N0U7 546 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 FGFRL1Q8N441 504 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 GALNT4Q8N4A0 578 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 YIPF7Q8N8F6 280 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 SPERTQ8NA61 448 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 CSNK2A3Q8NEV1 391 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 OR4M2Q8NGB6 313 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 OR2T27Q8NH04 317 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 LRRC29Q8WV35 223 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 OR5P3Q8WZ94 311 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 RPL3LQ92901 407 aaKnown RBP9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 ERGIC1Q969X5 290 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 RNF166Q96A37 237 aaPredicted RBP9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 C14orf119Q9NWQ9 140 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 CTSZQ9UBR2 303 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 OR52A1Q9UKL2 312 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 NOP16Q9Y3C1 178 aaKnown RBP9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 GMPPBQ9Y5P6 360 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 R4GMQ9 66 aa9.67□□□□□ -0.86
CCDC88C-208ENST00000554165 A0A1B0GW55 424 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 ACOD1A6NK06 481 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 LOC110117498-PIK3R3F6TDL0 507 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 CDIPTO14735 213 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 TNFRSF13BO14836 293 aaPredicted RBP9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 FOXH1O75593 365 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 LHBP01229 141 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 IFNA2P01563 188 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 GYPAP02724 150 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 DUX4L2P0CJ85 424 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 DUX4L3P0CJ86 424 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 DUX4L4P0CJ87 422 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 DUX4L5P0CJ88 424 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 DUX4L6P0CJ89 424 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 DUX4L7P0CJ90 424 aa9.66□□□□□ -0.86
CCDC88C-208ENST00000554165 GABRB1P18505 474 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms