RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 GOSR2O14653 212 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 SSX5O60225 188 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 HLA-HP01893 362 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 PI3P19957 117 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 FKBP2P26885 142 aaKnown RBP9.69□□□□□ -0.86
CUX1-212ENST00000547394 H2BFSP57053 126 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 ZNF260Q3ZCT1 412 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 RNFT1Q5M7Z0 435 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 SLC16A14Q7RTX9 510 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 TNFAIP8L1Q8WVP5 186 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 ACTR6Q9GZN1 396 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 SLC7A10Q9NS82 523 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 PRR13Q9NZ81 148 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 RAB22AQ9UL26 194 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 A0A1B0GUH1 482 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 ZNF503-AS2A6NEH8 195 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 NAP1L6A6NFF2 107 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 CREBL2O60519 120 aaPredicted RBP9.69□□□□□ -0.86
CUX1-212ENST00000547394 LHX2P50458 406 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 CXADRP78310 365 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 POU4F3Q15319 338 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 IGFBP7Q16270 282 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 LGALSLQ3ZCW2 172 aaPredicted RBP9.69□□□□□ -0.86
CUX1-212ENST00000547394 METTL11BQ5VVY1 283 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 DOK3Q7L591 496 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 FTMTQ8N4E7 242 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 DPCDQ9BVM2 203 aaPredicted RBP9.69□□□□□ -0.86
CUX1-212ENST00000547394 PRRG4Q9BZD6 226 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 NOSIPQ9Y314 301 aaKnown RBP9.69□□□□□ -0.86
CUX1-212ENST00000547394 ADGRG4Q8IZF6 3080 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 ZNF587BE7ETH6 402 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 CDC14BO60729 498 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 ALX3O95076 343 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 ZNF35P13682 527 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 WT1P19544 449 aaPredicted RBP9.68□□□□□ -0.86
CUX1-212ENST00000547394 CFPP27918 469 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 FAUP35544 74 aaKnown RBP9.68□□□□□ -0.86
CUX1-212ENST00000547394 CASRP41180 1078 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 MEOX1P50221 254 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 TMEM50BP56557 158 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 TSPAN5P62079 268 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 FAM27BQ5VT28 67 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 ZNF529Q6P280 563 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 KCNE4Q8WWG9 221 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 AQP3Q92482 292 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 DYRK2Q92630 601 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 LOXL4Q96JB6 756 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 HYLS1Q96M11 299 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 FAM173AQ9BQD7 235 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 HDHD3Q9BSH5 251 aaPredicted RBP9.68□□□□□ -0.86
CUX1-212ENST00000547394 ST6GALNAC5Q9BVH7 336 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 TMEM59Q9BXS4 323 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 GPR35Q9HC97 309 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 PIPOXQ9P0Z9 390 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 APC2O95996 2303 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 MRPL33O75394 65 aaKnown RBP9.68□□□□□ -0.86
CUX1-212ENST00000547394 GABRR1P24046 479 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 CLDN18P56856 261 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 SCAND1P57086 179 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 MRPS34P82930 218 aaKnown RBP9.68□□□□□ -0.86
CUX1-212ENST00000547394 BAMBIQ13145 260 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 NKAPLQ5M9Q1 402 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 C11orf88Q6PI97 169 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 SLC36A1Q7Z2H8 476 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 SUMF1Q8NBK3 374 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 CPEB3Q8NE35 698 aaKnown RBP9.68□□□□□ -0.86
CUX1-212ENST00000547394 OR51T1Q8NGJ9 327 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 OR10R2Q8NGX6 335 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 PNPLA2Q96AD5 504 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 REEP6Q96HR9 211 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 CITED4Q96RK1 184 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 GPR87Q9BY21 358 aa9.68□□□□□ -0.86
CUX1-212ENST00000547394 NPDC1Q9NQX5 325 aaPredicted RBP9.68□□□□□ -0.86
CUX1-212ENST00000547394 RELNP78509 3460 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 TTLL8A6PVC2 850 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 TMEM14DPA8MWL7 114 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 ERVH48-1M5A8F1 160 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 SDCBPO00560 298 aaPredicted RBP9.67□□□□□ -0.86
CUX1-212ENST00000547394 SYNGR3O43761 229 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 DHRS3O75911 302 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 BPNT1O95861 308 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 TGM6O95932 706 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 ZNF735P0CB33 412 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 CCL11P51671 97 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 SNU13P55769 128 aaKnown RBP9.67□□□□□ -0.86
CUX1-212ENST00000547394 TAS2R19P59542 299 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 ACTBP60709 375 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 PPIAP62937 165 aaKnown RBP9.67□□□□□ -0.86
CUX1-212ENST00000547394 ACTG1P63261 375 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 ZNF626Q68DY1 528 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 OR13C8Q8NGS7 320 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 OR1F12Q8NHA8 337 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 MRGPRFQ96AM1 343 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 IRF2BPLQ9H1B7 796 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 WNT5BQ9H1J7 359 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 SLA2Q9H6Q3 261 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 MOB1AQ9H8S9 216 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 IFT46Q9NQC8 304 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 SLC17A5Q9NRA2 495 aa9.67□□□□□ -0.86
CUX1-212ENST00000547394 CRIM1Q9NZV1 1036 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms