RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SOX15O60248 233 aa12.77□□□□□ -0.36
LIMS1-215ENST00000544547 TAF9Q16594 264 aa12.77□□□□□ -0.36
LIMS1-215ENST00000544547 NSUN5P2Q63ZY6 315 aa12.77□□□□□ -0.36
LIMS1-215ENST00000544547 DHRS11Q6UWP2 260 aa12.77□□□□□ -0.36
LIMS1-215ENST00000544547 FAM160A2Q8N612 972 aaPredicted RBP12.77□□□□□ -0.36
LIMS1-215ENST00000544547 CLEC1AQ8NC01 280 aa12.77□□□□□ -0.36
LIMS1-215ENST00000544547 PRSS27Q9BQR3 290 aa12.77□□□□□ -0.36
LIMS1-215ENST00000544547 OR5AC2Q9NZP5 309 aa12.77□□□□□ -0.36
LIMS1-215ENST00000544547 PADI1Q9ULC6 663 aa12.77□□□□□ -0.36
LIMS1-215ENST00000544547 A0A0G2JMZ2 1700 aa12.77□□□□□ -0.36
LIMS1-215ENST00000544547 LRRC37A2A6NM11 1700 aa12.77□□□□□ -0.36
LIMS1-215ENST00000544547 OR4C45A6NMZ5 311 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 C4orf47A7E2U8 309 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 NDUFA2O43678 99 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 CST7O76096 145 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 ADRA2CP18825 462 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 SLC35A1P78382 337 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 CLEC18BQ6UXF7 455 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 SLC43A2Q8N370 569 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 SPTSSAQ969W0 71 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 C1orf198Q9H425 327 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 A0A1W2PPQ1 181 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 EPPINO95925 133 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 TMEM52BQ4KMG9 183 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 SLC25A42Q86VD7 318 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 COMMD1Q8N668 190 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 APOBEC4Q8WW27 367 aaKnown RBP12.77□□□□□ -0.37
LIMS1-215ENST00000544547 OR8B4Q96RC9 309 aa12.77□□□□□ -0.37
LIMS1-215ENST00000544547 GJE1A6NN92 205 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 SLC25A4P12235 298 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 LPAR6P43657 344 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 GAS1P54826 345 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 NR0B2Q15466 257 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 PRSS41Q7RTY9 318 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 OTOSQ8NHW6 89 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 PACRGQ96M98 296 aaPredicted RBP12.76□□□□□ -0.37
LIMS1-215ENST00000544547 LRFN5Q96NI6 719 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 MOGAT1Q96PD6 335 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 COA4Q9NYJ1 87 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 CDRT15L2A8MXV6 281 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 CASP6P55212 293 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 MRPS21P82921 87 aaKnown RBP12.76□□□□□ -0.37
LIMS1-215ENST00000544547 COL19A1Q14993 1142 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 TMEM41BQ5BJD5 291 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 PRR18Q8N4B5 295 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 KTI12Q96EK9 354 aaPredicted RBP12.76□□□□□ -0.37
LIMS1-215ENST00000544547 WDR13Q9H1Z4 485 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 CDH20Q9HBT6 801 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 KLHDC2Q9Y2U9 406 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 WSB1Q9Y6I7 421 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 E5RGE8 158 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 GPR137BO60478 399 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 SERPINE2P07093 398 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 SLC35E2P0CK97 266 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 CSNK1EP49674 416 aaKnown RBP12.76□□□□□ -0.37
LIMS1-215ENST00000544547 DAP3P51398 398 aaKnown RBP12.76□□□□□ -0.37
LIMS1-215ENST00000544547 SLC36A1Q7Z2H8 476 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 EIF4E3Q8N5X7 224 aaKnown RBP12.76□□□□□ -0.37
LIMS1-215ENST00000544547 TVP23CQ96ET8 276 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 NSG2Q9Y328 171 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 HBE1P02100 147 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 CXCL10P02778 98 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 HOXB1P14653 301 aaPredicted RBP12.76□□□□□ -0.37
LIMS1-215ENST00000544547 MYOGP15173 224 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 SLC37A1P57057 533 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 RPL27P61353 136 aaKnown RBP12.76□□□□□ -0.37
LIMS1-215ENST00000544547 SURF2Q15527 256 aaPredicted RBP12.76□□□□□ -0.37
LIMS1-215ENST00000544547 LYSMD4Q5XG99 296 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 LGI3Q8N145 548 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 ABHD5Q8WTS1 349 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 SDSLQ96GA7 329 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 FAM210BQ96KR6 192 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 TMEM68Q96MH6 324 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 ALX4Q9H161 411 aaPredicted RBP12.76□□□□□ -0.37
LIMS1-215ENST00000544547 LRP12Q9Y561 859 aa12.76□□□□□ -0.37
LIMS1-215ENST00000544547 A0A087WUJ7 227 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 H7BYZ3 331 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 UTS2O95399 124 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 SFT2D2O95562 160 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 CD79AP11912 226 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 FOLR3P41439 243 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 EMG1Q92979 244 aaKnown RBP12.75□□□□□ -0.37
LIMS1-215ENST00000544547 RPUSD4Q96CM3 377 aaKnown RBP12.75□□□□□ -0.37
LIMS1-215ENST00000544547 PLEKHA2Q9HB19 425 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 KCNIP1Q9NZI2 227 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 AUP1Q9Y679 476 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 PSME4Q14997 1843 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 GEMIN2O14893 280 aaKnown RBP12.75□□□□□ -0.37
LIMS1-215ENST00000544547 ARPC3O15145 178 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 ZNF205O95201 554 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 DBHP09172 617 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 CALCRP30988 508 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 LIMK1P53667 647 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 ZNF66Q6ZN08 573 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 SPPL3Q8TCT6 385 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 KCNK7Q9Y2U2 307 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 ZNF646O15015 1829 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-215ENST00000544547 H3BP45 60 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 ZFAND5O76080 213 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 OR7C1O76099 320 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms