RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 CCDC74BQ96LY2 380 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 NUDT16L1Q9BRJ7 211 aaKnown RBP11.07□□□□□ -0.64
USP3-203ENST00000538686 NUDT9Q9BW91 350 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 MS4A8Q9BY19 250 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 SMIM3Q9BZL3 60 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 NDUFB2O95178 105 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 IGHEP01854 428 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 HBE1P02100 147 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 FHITP49789 147 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 LBX1P52954 281 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 CRYBB1P53674 252 aaPredicted RBP11.07□□□□□ -0.64
USP3-203ENST00000538686 DUSP8Q13202 625 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 VAX1Q5SQQ9 334 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 OR4C11Q6IEV9 310 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 C16orf59Q7L2K0 433 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 H1FOOQ8IZA3 346 aaPredicted RBP11.07□□□□□ -0.64
USP3-203ENST00000538686 LYG1Q8N1E2 194 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 ZNF738Q8NE65 137 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 Q8NFD4 153 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 OR6K6Q8NGW6 343 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 GLYATL1Q969I3 302 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 ZG16BQ96DA0 208 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 KXD1Q9BQD3 176 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 HIPK2Q9H2X6 1198 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.07□□□□□ -0.64
USP3-203ENST00000538686 C1orf123Q9NWV4 160 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 ANAPC1Q9H1A4 1944 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 FAM230AA0A1W2PPH8 454 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 CDC14CA4D256 554 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 LYPD3O95274 346 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 ABHD16AO95870 558 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 CT45A8P0DMV1 189 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 CT45A9P0DMV2 189 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 SERPINA4P29622 427 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 SPEM2Q0P670 501 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 IL24Q13007 206 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 FZD2Q14332 565 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 ICAM4Q14773 271 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 FAM189A2Q15884 450 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 ANKRD55Q3KP44 614 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 ZNF260Q3ZCT1 412 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 CT45A2Q5DJT8 189 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 OR4C5Q8NGB2 326 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 OR51L1Q8NGJ5 315 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 OR1L6Q8NGR2 347 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 TMEM230Q96A57 120 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 DCBLD2Q96PD2 775 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 MAGT1Q9H0U3 335 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 C5orf66Q9H5L9 145 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 ELL3Q9HB65 397 aaPredicted RBP11.06□□□□□ -0.64
USP3-203ENST00000538686 MRM2Q9UI43 246 aaKnown RBP11.06□□□□□ -0.64
USP3-203ENST00000538686 FCF1Q9Y324 198 aaKnown RBP11.06□□□□□ -0.64
USP3-203ENST00000538686 KCNE3Q9Y6H6 103 aa11.06□□□□□ -0.64
USP3-203ENST00000538686 MBLAC1A4D2B0 266 aaPredicted RBP11.05□□□□□ -0.64
USP3-203ENST00000538686 NPIPB15A6NHN6 443 aaPredicted RBP11.05□□□□□ -0.64
USP3-203ENST00000538686 CEBPGP53567 150 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 TSTA3Q13630 321 aaPredicted RBP11.05□□□□□ -0.64
USP3-203ENST00000538686 HYAL4Q2M3T9 481 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 IAH1Q2TAA2 248 aaPredicted RBP11.05□□□□□ -0.64
USP3-203ENST00000538686 MORN2Q502X0 79 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 VHLLQ6RSH7 139 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 KMT5CQ86Y97 462 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 MAML2Q8IZL2 1156 aaPredicted RBP11.05□□□□□ -0.64
USP3-203ENST00000538686 SUSD3Q96L08 255 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 MS4A10Q96PG2 267 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 TNFRSF13CQ96RJ3 184 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 KCNK15Q9H427 330 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 SLC7A11Q9UPY5 501 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 DENND4CQ5VZ89 1909 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 PLXND1Q9Y4D7 1925 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 LOC105371242A0A075B767 164 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 SLC38A8A6NNN8 435 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 C1orf105O95561 183 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 LAMP2P13473 410 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 PTNP21246 168 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 UBE2NP61088 152 aaKnown RBP11.05□□□□□ -0.64
USP3-203ENST00000538686 TMPRSS7Q7RTY8 843 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 APOBEC3FQ8IUX4 373 aaKnown RBP11.05□□□□□ -0.64
USP3-203ENST00000538686 WDFY1Q8IWB7 410 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 TMEM156Q8N614 296 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 NUP43Q8NFH3 380 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 FNDC9Q8TBE3 224 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 ASB5Q8WWX0 329 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 FAM46BQ96A09 425 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 CIB3Q96Q77 187 aaPredicted RBP11.05□□□□□ -0.64
USP3-203ENST00000538686 RNF2Q99496 336 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 VAMP8Q9BV40 100 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 PCBD2Q9H0N5 130 aa11.05□□□□□ -0.64
USP3-203ENST00000538686 ZNF552Q9H707 407 aaPredicted RBP11.05□□□□□ -0.64
USP3-203ENST00000538686 THSD7AQ9UPZ6 1657 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 IGHV2-70DA0A0C4DH43 119 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 ARL5CA6NH57 179 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 F6UZH7 168 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 GRM6O15303 877 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 OR5G3P0C626 314 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 FSTP19883 344 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 BMP5P22003 454 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 THPOP40225 353 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 TFPI2P48307 235 aa11.04□□□□□ -0.64
USP3-203ENST00000538686 ZNF41P51814 821 aaPredicted RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms