RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 GRPP07492 148 aa17.23■□□□□ 0.35
VPS28-206ENST00000526734 MRPL3P09001 348 aaKnown RBP17.23■□□□□ 0.35
VPS28-206ENST00000526734 FPR2P25090 351 aa17.23■□□□□ 0.35
VPS28-206ENST00000526734 RBMXP38159 391 aaKnown RBP17.23■□□□□ 0.35
VPS28-206ENST00000526734 PSMB10P40306 273 aa17.23■□□□□ 0.35
VPS28-206ENST00000526734 RIDAP52758 137 aaKnown RBP17.23■□□□□ 0.35
VPS28-206ENST00000526734 ARMCX4Q5H9R4 360 aa17.23■□□□□ 0.35
VPS28-206ENST00000526734 FAM201AQ5SY85 155 aa17.23■□□□□ 0.35
VPS28-206ENST00000526734 GALNT4Q8N4A0 578 aa17.23■□□□□ 0.35
VPS28-206ENST00000526734 OR8B12Q8NGG6 310 aa17.23■□□□□ 0.35
VPS28-206ENST00000526734 DVL3Q92997 716 aaPredicted RBP17.23■□□□□ 0.35
VPS28-206ENST00000526734 RTL8AQ9BWD3 113 aa17.23■□□□□ 0.35
VPS28-206ENST00000526734 MOB1AQ9H8S9 216 aa17.23■□□□□ 0.35
VPS28-206ENST00000526734 MMP26Q9NRE1 261 aa17.23■□□□□ 0.35
VPS28-206ENST00000526734 IGHV2-70DA0A0C4DH43 119 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 TMEM269A0A1B0GVZ9 245 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 hCG_1807616A0A1W2PRN6 198 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 OOEPA6NGQ2 149 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 TMEM210A6NLX4 147 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 CFHR2P36980 270 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 POU4F2Q12837 409 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 C11orf91Q3C1V1 193 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 BPIFB2Q8N4F0 458 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 OR1M1Q8NGA1 313 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 RAB40AQ8WXH6 277 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 SEMA6AQ9H2E6 1030 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 FAM206AQ9NX38 181 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 WARS2Q9UGM6 360 aaKnown RBP17.22■□□□□ 0.35
VPS28-206ENST00000526734 RHBDD3Q9Y3P4 386 aa17.22■□□□□ 0.35
VPS28-206ENST00000526734 STAB1Q9NY15 2570 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 ZNF670-ZNF695F2Z2N8 137 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 EPHA2P29317 976 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 MAP2K3P46734 347 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 HILS1P60008 231 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 PAX2Q02962 417 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 PAX8Q06710 450 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 TMED1Q13445 227 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 TEX36Q5VZQ5 186 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 CD276Q5ZPR3 534 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 WDR25Q64LD2 544 aaPredicted RBP17.21■□□□□ 0.35
VPS28-206ENST00000526734 KRT74Q7RTS7 529 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 SLC35F2Q8IXU6 374 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 GCSAMQ8N6F7 178 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 SEMA6DQ8NFY4 1073 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 OR8J1Q8NGP2 316 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 FAM81AQ8TBF8 368 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 ITPKCQ96DU7 683 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 TLNRD1Q9H1K6 362 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 CLN6Q9NWW5 311 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 ERVK-18Q9QC07 812 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 NUFIP1Q9UHK0 495 aaKnown RBP17.21■□□□□ 0.35
VPS28-206ENST00000526734 IKZF2Q9UKS7 526 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 ORC6Q9Y5N6 252 aa17.21■□□□□ 0.35
VPS28-206ENST00000526734 LHBP01229 141 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 MUC1P15941 1255 aaPredicted RBP17.2■□□□□ 0.34
VPS28-206ENST00000526734 CD80P33681 288 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 HCCSP53701 268 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 EGR3Q06889 387 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 PRDX4Q13162 271 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 ZBTB37Q5TC79 503 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 ZNF322Q6U7Q0 402 aaPredicted RBP17.2■□□□□ 0.34
VPS28-206ENST00000526734 BOLLQ8N9W6 283 aaKnown RBP17.2■□□□□ 0.34
VPS28-206ENST00000526734 PYDC1Q8WXC3 89 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 DACT3Q96B18 629 aaPredicted RBP17.2■□□□□ 0.34
VPS28-206ENST00000526734 LYZL4Q96KX0 146 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 HIST1H2AAQ96QV6 131 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 IL4I1Q96RQ9 567 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 ADGRL4Q9HBW9 690 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 NUP50Q9UKX7 468 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 COPS3Q9UNS2 423 aa17.2■□□□□ 0.34
VPS28-206ENST00000526734 WNK2Q9Y3S1 2297 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 ZNF816-ZNF321PA0A0X1KG74 233 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 KIR2DS1A0A191URI9 304 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 M0R129 80 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 EBAG9O00559 213 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 ENSAO43768 121 aaKnown RBP17.19■□□□□ 0.34
VPS28-206ENST00000526734 ACKR3P25106 362 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 HTR1FP30939 366 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 CDC42P60953 191 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 KPNB1Q14974 876 aaKnown RBP17.19■□□□□ 0.34
VPS28-206ENST00000526734 LYPD2Q6UXB3 125 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 ZNF841Q6ZN19 808 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 ZNF826PQ6ZT77 177 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 WDR86Q86TI4 376 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 ZDHHC23Q8IYP9 409 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 OR10Z1Q8NGY1 313 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 RFKQ969G6 155 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 C12orf43Q96C57 262 aaKnown RBP17.19■□□□□ 0.34
VPS28-206ENST00000526734 PBOV1Q9GZY1 135 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 RIBC2Q9H4K1 309 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 KAAG1Q9UBP8 84 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 CUBNO60494 3623 aa17.19■□□□□ 0.34
VPS28-206ENST00000526734 SAC3D1A6NKF1 404 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 C3orf80F5H4A9 247 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 TRIM77I1YAP6 450 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 ADAM20O43506 726 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 MTRF1O75570 445 aaKnown RBP17.18■□□□□ 0.34
VPS28-206ENST00000526734 VENTXO95231 258 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 LIPFP07098 398 aa17.18■□□□□ 0.34
VPS28-206ENST00000526734 CXCR4P61073 352 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms