RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 RPUSD3Q6P087 351 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 OR5M8Q8NGP6 311 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 RAB39BQ96DA2 213 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 TMPRSS13Q9BYE2 586 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 ARRDC1-AS1Q9H2J1 176 aa14.63□□□□□ -0.07
CCDC88B-209ENST00000494080 CRYBA2P53672 197 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 TGFBR3Q03167 851 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 NPSR1Q6W5P4 371 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 GJC3Q8NFK1 279 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 RASL12Q9NYN1 266 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 CES1P1Q9UKY3 287 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 RALGAPA2Q2PPJ7 1873 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF724A8MTY0 619 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 GP1BAP07359 652 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 CHRM2P08172 466 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF136P52737 540 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 NCMAPQ5T1S8 102 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 SMOC1Q9H4F8 434 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 FLRT3Q9NZU0 649 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 GAB2Q9UQC2 676 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 TMEM127O75204 238 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 FOXL2P58012 376 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 CD226Q15762 336 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 OGFOD3Q6PK18 319 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 C6orf15Q6UXA7 325 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 OR2G3Q8NGZ4 309 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 IL1F10Q8WWZ1 152 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 ABHD6Q9BV23 337 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 CHST6Q9GZX3 395 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 CRLF2Q9HC73 371 aa14.62□□□□□ -0.07
CCDC88B-209ENST00000494080 TNFSF14O43557 240 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 G0S2P27469 103 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 SSBP1Q04837 148 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 BATF2Q8N1L9 274 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 LFNGQ8NES3 379 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 WNT2BQ93097 391 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 PCED1AQ9H1Q7 454 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 KCNK15Q9H427 330 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 FAM86C1Q9NVL1 165 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 ANKRD30BLA7E2S9 258 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 MSTNO14793 375 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 PTP4A3O75365 173 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 DAOP14920 347 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 SLC17A1Q14916 467 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 INPP5JQ15735 1006 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 Q3ZCU0 254 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 PHLDA2Q53GA4 152 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF705AQ6ZN79 300 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 MAML2Q8IZL2 1156 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 CA5BP1Q8WTZ4 195 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 FBXO17Q96EF6 278 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 VSTM2LQ96N03 204 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 PRAMEF27A3QJZ7 478 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 VSTM5A8MXK1 200 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 HSPB6O14558 160 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 SCAF4O95104 1147 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 ABHD16AO95870 558 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 C1QL3Q5VWW1 255 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 MKXQ8IYA7 352 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 RXFP4Q8TDU9 374 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 A0A0G2JMZ2 1700 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 WNT11O96014 354 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 SERPINE2P07093 398 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 ABOP16442 354 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 PTGFRP43088 359 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 RPS18P62269 152 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 RAB11AP62491 216 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 SLC22A18ASQ8N1D0 253 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF321PQ8N8H1 164 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 OR10G3Q8NGC4 313 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 C2orf50Q96LR7 162 aa14.61□□□□□ -0.07
CCDC88B-209ENST00000494080 CDKN2AP42771 156 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 SSTP61278 116 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 HNF4GQ14541 408 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 S1PR5Q9H228 398 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 PRO1933Q9H354 126 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 SH3BGRL2Q9UJC5 107 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 LOXL2Q9Y4K0 774 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 H2AFB1P0C5Y9 115 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 TMIGD3P0DMS9 266 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 ERGP11308 486 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 NFYBP25208 207 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 RAB1AP62820 205 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 FMODQ06828 376 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 SPACA9Q96E40 222 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF230Q9UIE0 474 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 WASF3Q9UPY6 502 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 DTX4Q9Y2E6 619 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 NEUROG3Q9Y4Z2 214 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 SBF1O95248 1867 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 TRBV23-1A0A0A0MS06 115 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 ZFP92A6NM28 416 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 OGG1O15527 345 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 CYB5BO43169 146 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 CXCL13O43927 109 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 GUSBP08236 651 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 ECH1Q13011 328 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 ZNF266Q14584 549 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 PRSS35Q8N3Z0 413 aa14.6□□□□□ -0.07
CCDC88B-209ENST00000494080 EXD3Q8N9H8 876 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms