RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PAX2Q02962 417 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 ZNF154Q13106 437 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 PRDX4Q13162 271 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 ZNF841Q6ZN19 808 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 GID4Q8IVV7 300 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 C1orf87Q8N0U7 546 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 SPERTQ8NA61 448 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 OR1M1Q8NGA1 313 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 OR8S1Q8NH09 359 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 HPSE2Q8WWQ2 592 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 ITPKCQ96DU7 683 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 SEH1LQ96EE3 360 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 PAPOLGQ9BWT3 736 aaKnown RBP15.13■□□□□ 0.01
COL9A3-214ENST00000490398 RGCCQ9H4X1 137 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 C7orf69Q9H7B7 122 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 CLN6Q9NWW5 311 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 CTSZQ9UBR2 303 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 ENOPH1Q9UHY7 261 aa15.13■□□□□ 0.01
COL9A3-214ENST00000490398 POLR3KQ9Y2Y1 108 aaPredicted RBP15.13■□□□□ 0.01
COL9A3-214ENST00000490398 NOP16Q9Y3C1 178 aaKnown RBP15.13■□□□□ 0.01
COL9A3-214ENST00000490398 STAB1Q9NY15 2570 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 IGHV3OR15-7A0A075B7D8 119 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 ZNF254O75437 659 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 FSTL3O95633 263 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 FSHBP01225 129 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 LHBP01229 141 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 ZNF12P17014 697 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 CFL1P23528 166 aaKnown RBP15.12■□□□□ 0.01
COL9A3-214ENST00000490398 ALDH3A2P51648 485 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 RIDAP52758 137 aaKnown RBP15.12■□□□□ 0.01
COL9A3-214ENST00000490398 C1QL2Q7Z5L3 287 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 PLPP7Q8NBV4 271 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 CSNK2A3Q8NEV1 391 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 OR8J1Q8NGP2 316 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 FAM81AQ8TBF8 368 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 OR51E1Q8TCB6 317 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 ASB17Q8WXJ9 295 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 PIGCQ92535 297 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 NEIL1Q96FI4 390 aaPredicted RBP15.12■□□□□ 0.01
COL9A3-214ENST00000490398 GPR84Q9NQS5 396 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 WARS2Q9UGM6 360 aaKnown RBP15.12■□□□□ 0.01
COL9A3-214ENST00000490398 METRNQ9UJH8 293 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 INSIG2Q9Y5U4 225 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 TMEM14AQ9Y6G1 99 aa15.12■□□□□ 0.01
COL9A3-214ENST00000490398 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.11■□□□□ 0.01
COL9A3-214ENST00000490398 ZNF670-ZNF695F2Z2N8 137 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.11■□□□□ 0.01
COL9A3-214ENST00000490398 J3QLI3 93 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 LGALS8O00214 317 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 ENTPD6O75354 484 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 CST4P01036 141 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 TTRP02766 147 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 DCTDP32321 178 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 PSMB10P40306 273 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 ESCO2Q56NI9 601 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 OR5P3Q8WZ94 311 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 DACT3Q96B18 629 aaPredicted RBP15.11■□□□□ 0.01
COL9A3-214ENST00000490398 FAM71F1Q96KD3 344 aaPredicted RBP15.11■□□□□ 0.01
COL9A3-214ENST00000490398 SSBP3Q9BWW4 388 aaPredicted RBP15.11■□□□□ 0.01
COL9A3-214ENST00000490398 RASSF4Q9H2L5 321 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 C14orf119Q9NWQ9 140 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 MIOXQ9UGB7 285 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 NUFIP1Q9UHK0 495 aaKnown RBP15.11■□□□□ 0.01
COL9A3-214ENST00000490398 SLC22A13Q9Y226 551 aa15.11■□□□□ 0.01
COL9A3-214ENST00000490398 WNK2Q9Y3S1 2297 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 PPIAL4CA0A0B4J2A2 164 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 A0A0U1RQV5 110 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 A0A1B0GW55 424 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 A0A1W2PQL4 384 aaPredicted RBP15.1■□□□□ 0.01
COL9A3-214ENST00000490398 hCG_1807616A0A1W2PRN6 198 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 ACOD1A6NK06 481 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 CDIPTO14735 213 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 VENTXO95231 258 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 GYPAP02724 150 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 DUX4L2P0CJ85 424 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 DUX4L3P0CJ86 424 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 DUX4L4P0CJ87 422 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 DUX4L5P0CJ88 424 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 DUX4L6P0CJ89 424 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 DUX4L7P0CJ90 424 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 GNALP38405 381 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 PITPNBP48739 271 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 KLF17Q5JT82 389 aaPredicted RBP15.1■□□□□ 0.01
COL9A3-214ENST00000490398 ZNF684Q5T5D7 378 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 WDR25Q64LD2 544 aaPredicted RBP15.1■□□□□ 0.01
COL9A3-214ENST00000490398 DUX4L9Q6RFH8 374 aaPredicted RBP15.1■□□□□ 0.01
COL9A3-214ENST00000490398 WDR82Q6UXN9 313 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 DCDC5Q6ZRR9 648 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 FAM90A1Q86YD7 464 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 PQLC1Q8N2U9 271 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 FGFRL1Q8N441 504 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 GALNT4Q8N4A0 578 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 LRRC29Q8WV35 223 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 RPL3LQ92901 407 aaKnown RBP15.1■□□□□ 0.01
COL9A3-214ENST00000490398 HRASLS5Q96KN8 279 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 OCEL1Q9H607 264 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 SMURF1Q9HCE7 757 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 DUX4Q9UBX2 424 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 GTF2A1LQ9UNN4 478 aa15.1■□□□□ 0.01
COL9A3-214ENST00000490398 LRCH1Q9Y2L9 728 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms