RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 KCNE1BA0A087WTH5 132 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 SERTM2A0A1B0GWG4 89 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 CLDN34H7C241 214 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 M0R3G1 203 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 NME4O00746 187 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 LSM1O15116 133 aaKnown RBP0.93□□□□□ -2.26
VPS50-216ENST00000484954 OR7C2O60412 319 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 CCDC22O60826 627 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 DNAJB6O75190 326 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 FCN3O75636 299 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 GATBO75879 557 aaKnown RBP0.93□□□□□ -2.26
VPS50-216ENST00000484954 SCELO95171 688 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 FSTL3O95633 263 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 HPRT1P00492 218 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 HLA-HP01893 362 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 TACSTD2P09758 323 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 HSPD1P10809 573 aaKnown RBP0.93□□□□□ -2.26
VPS50-216ENST00000484954 MYL2P10916 166 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 PFN2P35080 140 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 UQCRFS1P47985 274 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 ZNF121P58317 390 aaPredicted RBP0.93□□□□□ -2.26
VPS50-216ENST00000484954 TAS2R46P59540 309 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 RPS15AP62244 130 aaKnown RBP0.93□□□□□ -2.26
VPS50-216ENST00000484954 MERTKQ12866 999 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 PNOCQ13519 176 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 RPEL1Q2QD12 228 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 SP6Q3SY56 376 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 TPTE2P1Q5T6R2 138 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 TMEM53Q6P2H8 277 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 SPESP1Q6UW49 350 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 C12orf54Q6X4T0 127 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 MDP1Q86V88 176 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 APRG1Q8IVJ8 170 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 GABRG1Q8N1C3 465 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 CBR4Q8N4T8 237 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 TTC29Q8NA56 475 aaPredicted RBP0.93□□□□□ -2.26
VPS50-216ENST00000484954 LY6G5BQ8NDX9 201 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 TSEN15Q8WW01 171 aaKnown RBP0.93□□□□□ -2.26
VPS50-216ENST00000484954 SGTBQ96EQ0 304 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 FAM19A4Q96LR4 140 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 UQCC2Q9BRT2 126 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 NUDT9Q9BW91 350 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 SLIRPQ9GZT3 109 aaKnown RBP0.93□□□□□ -2.26
VPS50-216ENST00000484954 DUSP21Q9H596 190 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 ELOVL6Q9H5J4 265 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 TRIM45Q9H8W5 580 aaPredicted RBP0.93□□□□□ -2.26
VPS50-216ENST00000484954 LYRM4Q9HD34 91 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 MED4Q9NPJ6 270 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 SLC39A1Q9NY26 324 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 IL37Q9NZH6 218 aa0.93□□□□□ -2.26
VPS50-216ENST00000484954 FARSAQ9Y285 508 aaKnown RBP0.93□□□□□ -2.26
VPS50-216ENST00000484954 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 SYCE1LA8MT33 242 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 ANKRD65E5RJM6 399 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 TNFRSF11BO00300 401 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 BCKDKO14874 412 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 ZBTB5O15062 677 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 SIVA1O15304 175 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 CACNG3O60359 315 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 SLC16A7O60669 478 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 IGKV1-16P04430 117 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 CLTAP09496 248 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 IFI30P13284 250 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 GALP22466 123 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 IL32P24001 234 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 PPICP45877 212 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 SERPINB8P50452 374 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 C21orf59P57076 290 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 RGS8P57771 180 aaPredicted RBP0.92□□□□□ -2.26
VPS50-216ENST00000484954 BTN1A1Q13410 526 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 GABRA6Q16445 453 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 TRMT5Q32P41 509 aaKnown RBP0.92□□□□□ -2.26
VPS50-216ENST00000484954 ZNF829Q3KNS6 432 aaPredicted RBP0.92□□□□□ -2.26
VPS50-216ENST00000484954 CPTPQ5TA50 214 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 ZFAND6Q6FIF0 208 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 APOBEC3HQ6NTF7 200 aaKnown RBP0.92□□□□□ -2.26
VPS50-216ENST00000484954 TTC23LQ6PF05 361 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 BZW1Q7L1Q6 419 aaKnown RBP0.92□□□□□ -2.26
VPS50-216ENST00000484954 EIF3MQ7L2H7 374 aaKnown RBP0.92□□□□□ -2.26
VPS50-216ENST00000484954 HORMAD1Q86X24 394 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 JAGN1Q8N5M9 183 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 LINC00469Q8N7U9 141 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 C8orf31Q8N9H6 132 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 C19orf18Q8NEA5 215 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 OR6Q1Q8NGQ2 317 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 OR51F2Q8NH61 342 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 MUC7Q8TAX7 377 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 BTN2A3PQ96KV6 586 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 CSPG4P5Q96PW8 444 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 BPIFA3Q9BQP9 254 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 C11orf70Q9BRQ4 267 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 ZNF649Q9BS31 505 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 ZYG11BQ9C0D3 744 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 EXO5Q9H790 373 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 RRAGDQ9NQL2 400 aaPredicted RBP0.92□□□□□ -2.26
VPS50-216ENST00000484954 RGS18Q9NS28 235 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 NLE1Q9NVX2 485 aaPredicted RBP0.92□□□□□ -2.26
VPS50-216ENST00000484954 RBFOX1Q9NWB1 397 aaKnown RBP0.92□□□□□ -2.26
VPS50-216ENST00000484954 TAS2R5Q9NYW4 299 aa0.92□□□□□ -2.26
VPS50-216ENST00000484954 PDP1Q9P0J1 537 aaPredicted RBP0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms