RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 DUX4L4P0CJ87 422 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DUX4L5P0CJ88 424 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DUX4L6P0CJ89 424 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DUX4L7P0CJ90 424 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SLC15A1P46059 708 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CX3CR1P49238 355 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 GSK3AP49840 483 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 RAG2P55895 527 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ARF6P62330 175 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 POU4F2Q12837 409 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TRIM25Q14258 630 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 LCE2DQ5TA82 110 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 METTL11BQ5VVY1 283 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DUX4L9Q6RFH8 374 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR52H1Q8NGJ2 320 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 C8orf46Q8TAG6 207 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DYRK2Q92630 601 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 C12orf43Q96C57 262 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ITPKCQ96DU7 683 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SEH1LQ96EE3 360 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 REEP6Q96HR9 211 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 NIPSNAP1Q9BPW8 284 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 MUC13Q9H3R2 512 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TBC1D23Q9NUY8 699 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DUX4Q9UBX2 424 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 PRPF19Q9UMS4 504 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 RHBDD3Q9Y3P4 386 aa10.09□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 PRKDCP78527 4128 aaKnown RBP10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 ANKRD30BLA7E2S9 258 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 GPR37O15354 613 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 TIPRLO75663 272 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 CLPXO76031 633 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 GLCEO94923 617 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 KNG1P01042 644 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 APOC1P02654 83 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 ZNF121P58317 390 aaPredicted RBP10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 CSNK2BP67870 215 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 EIF2B1Q14232 305 aaKnown RBP10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 GK3PQ14409 553 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 TAF13Q15543 124 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 MICBQ29980 383 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 CDONQ4KMG0 1287 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 PDLIM3Q53GG5 364 aaPredicted RBP10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 WDR38Q5JTN6 314 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 GALNT4Q8N4A0 578 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 Q8N7P7 452 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 OR6K6Q8NGW6 343 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 LINC01006Q8NI28 216 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 LRRC29Q8WV35 223 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 TNFRSF14Q92956 283 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 LHX4Q969G2 390 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 INTS14Q96SY0 518 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 CCL13Q99616 98 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 FGF23Q9GZV9 251 aaPredicted RBP10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 SP140LQ9H930 580 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 MED20Q9H944 212 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 SAMHD1Q9Y3Z3 626 aaKnown RBP10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 U3KQV3 271 aa10.08□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 A0A0U1RQK1 487 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 hCG_1807616A0A1W2PRN6 198 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 ARRDC5A6NEK1 342 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 FAM183AA6NL82 134 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 A6NLC8 198 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 ACOT8O14734 319 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 IFNGP01579 166 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 IGHV4-59P01825 116 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 T-ENOLP0DO92 83 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 ZNF3P17036 446 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 CFL1P23528 166 aaKnown RBP10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 ACKR3P25106 362 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 GSTT1P30711 240 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 DCTDP32321 178 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 GRK5P34947 590 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 PROK1P58294 105 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 DEFA6Q01524 100 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 TIGD6Q17RP2 521 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 DNAL1Q4LDG9 190 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 STUMQ69YW2 141 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 C1orf122Q6ZSJ8 110 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 FAM57BQ71RH2 274 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 SHFQ7M4L6 423 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 DHFR2Q86XF0 187 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 ZSCAN4Q8NAM6 433 aaPredicted RBP10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 CSNK2A3Q8NEV1 391 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 OR10Z1Q8NGY1 313 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 OR8S1Q8NH09 359 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 OTOSQ8NHW6 89 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 TBC1D15Q8TC07 691 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 NPRL2Q8WTW4 380 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 FEVQ99581 238 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 DNTTIP1Q9H147 329 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 RGCCQ9H4X1 137 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 REEP1Q9H902 201 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 TNFRSF19Q9NS68 423 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 KIF17Q9P2E2 1029 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 N6AMT1Q9Y5N5 214 aa10.07□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 A0A1B0GVI7 797 aa10.06□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 RIIAD1A6NNX1 92 aa10.06□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 CDIPTO14735 213 aa10.06□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 TBX1O43435 398 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms