RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ERI1Q8IV48 349 aaKnown RBP10.77□□□□□ -0.69
LINC00339-202ENST00000416769 GJC3Q8NFK1 279 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 BPIFB6Q8NFQ5 453 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 OR51G2Q8NGK0 314 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 GGHQ92820 318 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 RNFT2Q96EX2 444 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 MNTQ99583 582 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 ADGRL4Q9HBW9 690 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 CYSLTR2Q9NS75 346 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 SCN3BQ9NY72 215 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 OR5V1Q9UGF6 321 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 CYB5R1Q9UHQ9 305 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 TIMM10BQ9Y5J6 103 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 COMMD3-BMI1R4GMX3 469 aa10.77□□□□□ -0.69
LINC00339-202ENST00000416769 IGHV2-70DA0A0C4DH43 119 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 SLC1A7O00341 560 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 DBHP09172 617 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 OR2T7P0C7T2 308 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 PMELP40967 661 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 HIST1H3AP68431 136 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 ESCO2Q56NI9 601 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 HIST2H3PS2Q5TEC6 136 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 LYPD2Q6UXB3 125 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 HIST2H3AQ71DI3 136 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 DPY19L4Q7Z388 723 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 C1QL4Q86Z23 238 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 ZNF454Q8N9F8 522 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 OR6N2Q8NGY6 317 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 OR2AJ1Q8NGZ0 328 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 OR2T27Q8NH04 317 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 OTOSQ8NHW6 89 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 UPRTQ96BW1 309 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 LGALS12Q96DT0 336 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 CNN2Q99439 309 aaKnown RBP10.76□□□□□ -0.69
LINC00339-202ENST00000416769 TMEM165Q9HC07 324 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 GCM1Q9NP62 436 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 FGF20Q9NP95 211 aaPredicted RBP10.76□□□□□ -0.69
LINC00339-202ENST00000416769 CNOT2Q9NZN8 540 aaKnown RBP10.76□□□□□ -0.69
LINC00339-202ENST00000416769 PPP1R3CQ9UQK1 317 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 TPRKBQ9Y3C4 175 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 PCDHGB5Q9Y5G0 923 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 LHFPL6Q9Y693 200 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 TMEM14AQ9Y6G1 99 aa10.76□□□□□ -0.69
LINC00339-202ENST00000416769 EFCAB10A6NFE3 127 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 POM121CA8CG34 1229 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 C22orf46C9J442 243 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 J3QRE1 110 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 PHYHO14832 338 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 XPNPEP2O43895 674 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 DOK2O60496 412 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 SELENOFO60613 162 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 FAM20BO75063 409 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 FADS2O95864 444 aaKnown RBP10.75□□□□□ -0.69
LINC00339-202ENST00000416769 MRPL3P09001 348 aaKnown RBP10.75□□□□□ -0.69
LINC00339-202ENST00000416769 PIPP12273 146 aaPredicted RBP10.75□□□□□ -0.69
LINC00339-202ENST00000416769 RPS2P15880 293 aaKnown RBP10.75□□□□□ -0.69
LINC00339-202ENST00000416769 ALOX5APP20292 161 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 KITLGP21583 273 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 DCKP27707 260 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 MDH2P40926 338 aaKnown RBP10.75□□□□□ -0.69
LINC00339-202ENST00000416769 NAA10P41227 235 aaPredicted RBP10.75□□□□□ -0.69
LINC00339-202ENST00000416769 HTR5AP47898 357 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 SCRN3Q0VDG4 424 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 SLC18B1Q6NT16 456 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 C16orf87Q6PH81 154 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 C9orf139Q6ZV77 190 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 VASH1Q7L8A9 365 aaPredicted RBP10.75□□□□□ -0.69
LINC00339-202ENST00000416769 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.75□□□□□ -0.69
LINC00339-202ENST00000416769 KLBQ86Z14 1044 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 SLC35F2Q8IXU6 374 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 OR10S1Q8NGN2 331 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 TMEM246Q9BRR3 403 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 SSBP3Q9BWW4 388 aaPredicted RBP10.75□□□□□ -0.69
LINC00339-202ENST00000416769 CHIAQ9BZP6 476 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 SLITRK2Q9H156 845 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 ZMAT3Q9HA38 289 aaKnown RBP10.75□□□□□ -0.69
LINC00339-202ENST00000416769 FKBP14Q9NWM8 211 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 PTTG3PQ9NZH4 202 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 ASH2LQ9UBL3 628 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 PSORS1C1Q9UIG5 152 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 LRCH1Q9Y2L9 728 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 POLR1DQ9Y2S0 133 aa10.75□□□□□ -0.69
LINC00339-202ENST00000416769 A0A0G2JK05 382 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 ZNF670-ZNF695F2Z2N8 137 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 F5H5P2 479 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 H3BSA7 217 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 MLNRO43193 412 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 LYNP07948 512 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 SFTPBP07988 381 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 SPARCP09486 303 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 CRHBPP24387 322 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 LIPAP38571 399 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 RPS27P42677 84 aaKnown RBP10.74□□□□□ -0.69
LINC00339-202ENST00000416769 HCCSP53701 268 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 RAG2P55895 527 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 FGF12P61328 243 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 EIF2B1Q14232 305 aaKnown RBP10.74□□□□□ -0.69
LINC00339-202ENST00000416769 CCDC92Q53HC0 331 aaPredicted RBP10.74□□□□□ -0.69
LINC00339-202ENST00000416769 HIST2H2BDQ6DRA6 164 aa10.74□□□□□ -0.69
LINC00339-202ENST00000416769 OR2T2Q6IF00 324 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms