RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 FBN2P35556 2912 aa5.4□□□□□ -1.54
USP40-202ENST00000409945 C11orf98E9PRG8 122 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 BLOC1S5-TXNDC5H3BN57 136 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 KPNA4O00629 521 aaPredicted RBP5.4□□□□□ -1.55
USP40-202ENST00000409945 ABCD4O14678 606 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 TPST2O60704 377 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 RAMP1O60894 148 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 CLPTM1O96005 669 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 SERPINA1P01009 418 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 CRYAAP02489 173 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 BGLAPP02818 100 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 MT-ND1P03886 318 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 SMIM18P0DKX4 95 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 KLK2P20151 261 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 RPL5P46777 297 aaKnown RBP5.4□□□□□ -1.55
USP40-202ENST00000409945 CSNK1A1P48729 337 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 GZMMP51124 257 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 ZNF83P51522 516 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 SMIM11AP58511 58 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 RPS4XP62701 263 aaKnown RBP5.4□□□□□ -1.55
USP40-202ENST00000409945 CHRNB3Q05901 458 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 TRAM2Q15035 370 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 ZNF74Q16587 644 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 ADAM5Q6NVV9 412 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 KDM8Q8N371 416 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 CBR4Q8N4T8 237 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 TSPAN14Q8NG11 270 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 GPR32P1Q8NGA4 272 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 FNDC8Q8TC99 324 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 MAGEE2Q8TD90 523 aaPredicted RBP5.4□□□□□ -1.55
USP40-202ENST00000409945 NUDCD2Q8WVJ2 157 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 NRGNQ92686 78 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 ALKBH3Q96Q83 286 aaPredicted RBP5.4□□□□□ -1.55
USP40-202ENST00000409945 INTS14Q96SY0 518 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 TSC22D3Q99576 134 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 KATNB1Q9BVA0 655 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 ULBP2Q9BZM5 246 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 NCOR1P1Q9H4R4 102 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 SLC17A5Q9NRA2 495 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 UBAP1Q9NZ09 502 aa5.4□□□□□ -1.55
USP40-202ENST00000409945 IGKV1D-42A0A075B6H8 117 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 ZNF99A8MXY4 864 aaPredicted RBP5.39□□□□□ -1.55
USP40-202ENST00000409945 RPL36A-HNRNPH2H7BZ11 118 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 M0R3G1 203 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 PLPP3O14495 311 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 GPR137BO60478 399 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 IGHG1P01857 330 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 ERCC1P07992 297 aaPredicted RBP5.39□□□□□ -1.55
USP40-202ENST00000409945 QDPRP09417 244 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 SAGP10523 405 aaPredicted RBP5.39□□□□□ -1.55
USP40-202ENST00000409945 CD99P14209 185 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 NCK1P16333 377 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 FUT1P19526 365 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 ARR3P36575 388 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 OR1E2P47887 323 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 ZP4Q12836 540 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 ZNF672Q499Z4 452 aaPredicted RBP5.39□□□□□ -1.55
USP40-202ENST00000409945 CARD17Q5XLA6 110 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 ZNF730Q6ZMV8 503 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 SLC35D2Q76EJ3 337 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 DPPA2Q7Z7J5 298 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 ZIC4Q8N9L1 334 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 OR1K1Q8NGR3 316 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 FGFBP3Q8TAT2 258 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 SMAP2Q8WU79 429 aaPredicted RBP5.39□□□□□ -1.55
USP40-202ENST00000409945 RDH12Q96NR8 316 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 SLC29A1Q99808 456 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 TMEM204Q9BSN7 226 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 WACQ9BTA9 647 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 CHID1Q9BWS9 393 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 YIPF3Q9GZM5 350 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 CXXC4Q9H2H0 198 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 LIME1Q9H400 295 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 ANKRD19PQ9H560 264 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 CRLF2Q9HC73 371 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 TNFRSF18Q9Y5U5 241 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 SLC25A15Q9Y619 301 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 PDZD2O15018 2839 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 FREM1Q5H8C1 2179 aa5.39□□□□□ -1.55
USP40-202ENST00000409945 SAA2-SAA4A0A096LPE2 208 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 A0A1W2PPK0 400 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 CENPBD1B2RD01 187 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 PDLIM1O00151 329 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 OR7A10O76100 309 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 RAB36O95755 333 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 PTHP01270 115 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 TFAP2AP05549 437 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 ZNF23P17027 643 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 IFNGR2P38484 337 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 SLC9A3P48764 834 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 FABP6P51161 128 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 P2RY4P51582 365 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 BIDP55957 195 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 MYBPC1Q00872 1141 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 APOFQ13790 326 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 CEACAM16Q2WEN9 425 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 MS4A18Q3C1V0 323 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 ZNF544Q6NX49 715 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 C11orf88Q6PI97 169 aa5.38□□□□□ -1.55
USP40-202ENST00000409945 TGIF2LYQ8IUE0 185 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms