RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 GLT8D1Q68CQ7 371 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 FOXL2NBQ6ZUU3 175 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 RHOUQ7L0Q8 258 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 SKA3Q8IX90 412 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 C1orf162Q8NEQ5 155 aaPredicted RBP11.68□□□□□ -0.54
LIMS1-204ENST00000409441 STEAP2Q8NFT2 490 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 FCAMRQ8WWV6 532 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 DEDD2Q8WXF8 326 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 AKAP1Q92667 903 aaKnown RBP eCLIP11.68□□□□□ -0.54
LIMS1-204ENST00000409441 NABP1Q96AH0 204 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 S100PBPQ96BU1 408 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 BOD1Q96IK1 185 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 FAM210AQ96ND0 272 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 TRAF4Q9BUZ4 470 aaPredicted RBP11.68□□□□□ -0.54
LIMS1-204ENST00000409441 ACTR6Q9GZN1 396 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 C1orf198Q9H425 327 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 NIPAL2Q9H841 368 aa11.68□□□□□ -0.54
LIMS1-204ENST00000409441 USP9XQ93008 2570 aaPredicted RBP11.67□□□□□ -0.54
LIMS1-204ENST00000409441 XRCC3O43542 346 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 TCRBP04435 133 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 TAS2R20P59543 309 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 SNTB2Q13425 540 aaKnown RBP11.67□□□□□ -0.54
LIMS1-204ENST00000409441 NRN1LQ496H8 165 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 FAM166AQ6J272 317 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 KLHL24Q6TFL4 600 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 DNM1P46Q6ZS02 220 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 BTN2A1Q7KYR7 527 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 PRSS45Q7RTY3 260 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 LINC00346Q8IVM7 164 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 IZUMO1Q8IYV9 350 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 LRRC18Q8N456 261 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 DNAAF1Q8NEP3 725 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 SLAMF6Q96DU3 332 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 USB1Q9BQ65 265 aaKnown RBP11.67□□□□□ -0.54
LIMS1-204ENST00000409441 CACNG6Q9BXT2 260 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 NELFAQ9H3P2 528 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 AUNIPQ9H7T9 357 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 MOB1AQ9H8S9 216 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 EMC7Q9NPA0 242 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 ING3Q9NXR8 418 aa11.67□□□□□ -0.54
LIMS1-204ENST00000409441 TMEM269A0A1B0GVZ9 245 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 OR5H1A6NKK0 313 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 ATP6V1G1O75348 118 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 FARS2O95363 451 aaKnown RBP11.66□□□□□ -0.54
LIMS1-204ENST00000409441 MSR1P21757 451 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 CDK2P24941 298 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 CAPZA1P52907 286 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 NKX2-5P52952 324 aaPredicted RBP11.66□□□□□ -0.54
LIMS1-204ENST00000409441 SNTB1Q13884 538 aaKnown RBP11.66□□□□□ -0.54
LIMS1-204ENST00000409441 RNASE12Q5GAN4 147 aaKnown RBP11.66□□□□□ -0.54
LIMS1-204ENST00000409441 ELFN2Q5R3F8 820 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 BCL2L15Q5TBC7 163 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 OLFML2AQ68BL7 652 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 NOXA1Q86UR1 476 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 WDR31Q8NA23 367 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 OR13C3Q8NGS6 347 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 OR52I2Q8NH67 350 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 RANGRFQ9HD47 186 aaPredicted RBP11.66□□□□□ -0.54
LIMS1-204ENST00000409441 NPDC1Q9NQX5 325 aaPredicted RBP11.66□□□□□ -0.54
LIMS1-204ENST00000409441 DIABLOQ9NR28 239 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 FBXL3Q9UKT7 428 aa11.66□□□□□ -0.54
LIMS1-204ENST00000409441 LOC100289279A0A1B0GTE1 492 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 LOC107986453A0A1B0GWG9 222 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 A0A1W2PR80 420 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 A8MV72 311 aaPredicted RBP11.65□□□□□ -0.54
LIMS1-204ENST00000409441 PATE4P0C8F1 98 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 GIFP27352 417 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 CCKARP32238 428 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 UBE2NP61088 152 aaKnown RBP11.65□□□□□ -0.54
LIMS1-204ENST00000409441 LSM6P62312 80 aaKnown RBP11.65□□□□□ -0.54
LIMS1-204ENST00000409441 TIMM23BQ5SRD1 257 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 ASPHD2Q6ICH7 369 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 C22orf34Q6ZV56 151 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 SERPINA12Q8IW75 414 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 CCDC36Q8IYA8 594 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 C17orf78Q8N4C9 275 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 NKAIN3Q8N8D7 197 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 OR6M1Q8NGM8 313 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 FOXRED1Q96CU9 486 aaPredicted RBP11.65□□□□□ -0.54
LIMS1-204ENST00000409441 WFIKKN1Q96NZ8 548 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 ZNF416Q9BWM5 594 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 OR10A4Q9H209 315 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 CENPMQ9NSP4 180 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 NUDT15Q9NV35 164 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 FAM206AQ9NX38 181 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 TAS2R4Q9NYW5 299 aa11.65□□□□□ -0.54
LIMS1-204ENST00000409441 SPTBN1Q01082 2364 aaKnown RBP11.65□□□□□ -0.54
LIMS1-204ENST00000409441 HELZ2Q9BYK8 2649 aaKnown RBP11.65□□□□□ -0.55
LIMS1-204ENST00000409441 ANKRD20A5PA0PJZ0 165 aa11.64□□□□□ -0.55
LIMS1-204ENST00000409441 FAM172BPA6NC97 362 aa11.64□□□□□ -0.55
LIMS1-204ENST00000409441 ZNF878C9JN71 531 aa11.64□□□□□ -0.55
LIMS1-204ENST00000409441 RGS13O14921 159 aa11.64□□□□□ -0.55
LIMS1-204ENST00000409441 HLA-HP01893 362 aa11.64□□□□□ -0.55
LIMS1-204ENST00000409441 CST2P09228 141 aa11.64□□□□□ -0.55
LIMS1-204ENST00000409441 H2AFB2P0C5Z0 115 aa11.64□□□□□ -0.55
LIMS1-204ENST00000409441 PPP3CBP16298 524 aa11.64□□□□□ -0.55
LIMS1-204ENST00000409441 HOXC12P31275 282 aa11.64□□□□□ -0.55
LIMS1-204ENST00000409441 POU3F4P49335 361 aa11.64□□□□□ -0.55
LIMS1-204ENST00000409441 SORDQ00796 357 aa11.64□□□□□ -0.55
LIMS1-204ENST00000409441 CD83Q01151 205 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms