RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 GAL3ST2Q9H3Q3 398 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 HES4Q9HCC6 221 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 RPH3ALQ9UNE2 315 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 WSB1Q9Y6I7 421 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 IGLV3-16A0A075B6K0 115 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 A0A0B4J2E0 115 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 A0A1B0GX12 115 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 A6NIN4 97 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 H7C1C5 153 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 FXYD1O00168 92 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 SIX6O95475 246 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 KRASP01116 189 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 CD3DP04234 171 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 HIST1H1DP16402 221 aaKnown RBP5.5□□□□□ -1.53
SCN1A-203ENST00000409050 HRH1P35367 487 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 SLC19A1P41440 591 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 PGGT1BP53609 377 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 RHOUQ7L0Q8 258 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 H1FXQ92522 213 aaKnown RBP5.5□□□□□ -1.53
SCN1A-203ENST00000409050 TMPRSS13Q9BYE2 586 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 KCNK15Q9H427 330 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 SLCO1C1Q9NYB5 712 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 SIT1Q9Y3P8 196 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 TRAPPC1Q9Y5R8 145 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 HMX2A2RU54 273 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 YY2O15391 372 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 SSSCA1O60232 199 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 OR7C2O60412 319 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 AKR7A3O95154 331 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 TXNDC12O95881 172 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 HMGA1P17096 107 aaKnown RBP5.5□□□□□ -1.53
SCN1A-203ENST00000409050 PCSK6P29122 969 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 NAAAQ02083 359 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 KHDC3LQ587J8 217 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 LRRC10Q5BKY1 277 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 Q6ZNB5 142 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 OR51H1Q8NH63 302 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 OR1F12Q8NHA8 337 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 FBXW5Q969U6 566 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 ERGIC1Q969X5 290 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 MS4A4AQ96JQ5 239 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 MRGPRX1Q96LB2 322 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 FYTTD1Q96QD9 318 aaKnown RBP5.5□□□□□ -1.53
SCN1A-203ENST00000409050 ADAT1Q9BUB4 502 aaKnown RBP5.5□□□□□ -1.53
SCN1A-203ENST00000409050 TGIF2Q9GZN2 237 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 SLIRPQ9GZT3 109 aaKnown RBP5.5□□□□□ -1.53
SCN1A-203ENST00000409050 ASH2LQ9UBL3 628 aa5.5□□□□□ -1.53
SCN1A-203ENST00000409050 RCL1Q9Y2P8 373 aaKnown RBP5.5□□□□□ -1.53
SCN1A-203ENST00000409050 FITM1A5D6W6 292 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 CIDEAO60543 219 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 GJB3O75712 270 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 DHRS3O75911 302 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 AREGP15514 252 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 PAX5Q02548 391 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 OR4C5Q8NGB2 326 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 SLC37A2Q8TED4 501 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 FAM173AQ9BQD7 235 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 ST3GAL6Q9Y274 331 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 IDSB3KWA1 339 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 CDS2O95674 445 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 ZNF17P17021 662 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 USF1P22415 310 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 PCBP4P57723 403 aaKnown RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 SNRPNP63162 240 aaKnown RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 ZNF141Q15928 474 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 CDKN3Q16667 212 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 RPEL1Q2QD12 228 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 PRAMEF20Q5VT98 475 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 TMEM211Q6ICI0 200 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 ZNF761Q86XN6 746 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 DOLPP1Q86YN1 238 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 TEX29Q8N6K0 151 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 CADM4Q8NFZ8 388 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 SLC26A10Q8NG04 563 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 OR1L6Q8NGR2 347 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 CLDN23Q96B33 292 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 NAA60Q9H7X0 242 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 SEBOXQ9HB31 216 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 PCDHGA9Q9Y5G4 932 aaKnown RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 TMEM265A0A087WTH1 108 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 A6NDN8 102 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 UPK1AO00322 258 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 PDE6DO43924 150 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 PRSS23O95084 383 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 SFTA3P0C7M3 94 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 YBX1P67809 324 aaKnown RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 IL11RAQ14626 422 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 TMEM30BQ3MIR4 351 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 CYB5R2Q6BCY4 276 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 LCN15Q6UWW0 184 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 TMEM207Q6UWW9 146 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 DOK4Q8TEW6 326 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 COPS9Q8WXC6 57 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 TMEM190Q8WZ59 177 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 HSD17B8Q92506 261 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 SPACA9Q96E40 222 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 ASB16Q96NS5 453 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 WWTR1Q9GZV5 400 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 OR6C3Q9NZP0 311 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 OR1A1Q9P1Q5 309 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms