RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 ENDOGQ14249 297 aaKnown RBP12.36□□□□□ -0.43
COL4A1-201ENST00000375820 OR4C16Q8NGL9 310 aa12.36□□□□□ -0.43
COL4A1-201ENST00000375820 OR2A14Q96R47 310 aa12.36□□□□□ -0.43
COL4A1-201ENST00000375820 PHF7Q9BWX1 381 aaPredicted RBP12.36□□□□□ -0.43
COL4A1-201ENST00000375820 ICAM5Q9UMF0 924 aa12.36□□□□□ -0.43
COL4A1-201ENST00000375820 E5RGE8 158 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 M0R1X1 148 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 BSGP35613 385 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 OR2F1Q13607 317 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 NSG2Q9Y328 171 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 IL5P05113 134 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 CCR2P41597 374 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 PPICP45877 212 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 GPNMBQ14956 572 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 TMEM240Q5SV17 173 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 RNASEKQ6P5S7 137 aaKnown RBP12.35□□□□□ -0.43
COL4A1-201ENST00000375820 GNPNAT1Q96EK6 184 aaPredicted RBP12.35□□□□□ -0.43
COL4A1-201ENST00000375820 UCK1Q9HA47 277 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 FBXO34Q9NWN3 711 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 A0A1B0GTL3 188 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 COX5AP20674 150 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 USF1P22415 310 aaPredicted RBP12.35□□□□□ -0.43
COL4A1-201ENST00000375820 COX7A1P24310 79 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 OPRK1P41145 380 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 CAPZBP47756 277 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 EGR3Q06889 387 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 BAK1Q16611 211 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 MORN4Q8NDC4 146 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 RTN4IP1Q8WWV3 396 aaPredicted RBP12.35□□□□□ -0.43
COL4A1-201ENST00000375820 IER2Q9BTL4 223 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 TRAV34A0A0B4J273 112 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 FIGNL2A6NMB9 653 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 PPM1DO15297 605 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 HOXC11O43248 304 aaPredicted RBP12.35□□□□□ -0.43
COL4A1-201ENST00000375820 BTG1P62324 171 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 GPX8Q8TED1 209 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 ADAT1Q9BUB4 502 aaKnown RBP12.35□□□□□ -0.43
COL4A1-201ENST00000375820 POMT1Q9Y6A1 747 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 FAM157AC9JC47 383 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 M0QZ24 198 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 CRYBA1P05813 215 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 OR1L4Q8NGR5 311 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 SMIM19Q96E16 107 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 SMOC1Q9H4F8 434 aa12.35□□□□□ -0.43
COL4A1-201ENST00000375820 GATCO43716 136 aaKnown RBP12.34□□□□□ -0.43
COL4A1-201ENST00000375820 CDK5Q00535 292 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 FMODQ06828 376 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 KCNE4Q8WWG9 221 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 PHYHIPQ92561 330 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 GNRHR2Q96P88 292 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 NQO2P16083 231 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 ZNF425Q6IV72 752 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 RAB18Q9NP72 206 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 XKRY2A2RUG3 117 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 RAF1P04049 648 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 LAMB4A4D0S4 1761 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 TNFRSF10CO14798 259 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 TAAR5O14804 337 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 PHOX2AO14813 284 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 PPIHO43447 177 aaKnown RBP12.34□□□□□ -0.43
COL4A1-201ENST00000375820 CD37P11049 281 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 CEACAM6P40199 344 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 CDK5R1Q15078 307 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 EMC4Q5J8M3 183 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 C16orf47Q6ZP98 133 aaPredicted RBP12.34□□□□□ -0.43
COL4A1-201ENST00000375820 LYG2Q86SG7 212 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 KLHDC8BQ8IXV7 354 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 DYNC2LI1Q8TCX1 351 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 CCL17Q92583 94 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 GSX2Q9BZM3 304 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 MOB1AQ9H8S9 216 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 TRGV10A0A0A0MS01 117 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 ANKUB1A6NFN9 424 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 CYR61O00622 381 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 EDIL3O43854 480 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 CA6P23280 308 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 OR1C1Q15619 314 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 TUSC1Q2TAM9 212 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 SLC16A12Q6ZSM3 486 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 FAM26EQ8N5C1 309 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 NOXO1Q8NFA2 376 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 TMEM9BQ9NQ34 198 aa12.34□□□□□ -0.43
COL4A1-201ENST00000375820 ZMAT5Q9UDW3 170 aaKnown RBP12.34□□□□□ -0.43
COL4A1-201ENST00000375820 IGKV3-7A0A075B6H7 116 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 DUS4LO95620 317 aaKnown RBP12.33□□□□□ -0.44
COL4A1-201ENST00000375820 ASAH1Q13510 395 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 Q6ZNX1 250 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 C2orf50Q96LR7 162 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 LRP12Q9Y561 859 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 UBR2Q8IWV8 1755 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 VAMP5O95183 116 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 LINC00303Q3SY05 128 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 ZNF71Q9NQZ8 489 aaPredicted RBP12.33□□□□□ -0.44
COL4A1-201ENST00000375820 FCGR3BO75015 233 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 JUNBP17275 347 aaPredicted RBP12.33□□□□□ -0.44
COL4A1-201ENST00000375820 BTNL3Q6UXE8 466 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 OR2A1Q8NGT9 310 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 CLDN23Q96B33 292 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 SCPEP1Q9HB40 452 aa12.33□□□□□ -0.44
COL4A1-201ENST00000375820 HES4Q9HCC6 221 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms