RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 ZNF705DP0CH99 300 aaPredicted RBP12.43□□□□□ -0.42
COL6A1-201ENST00000361866 ZNF705BP0CI00 300 aaPredicted RBP12.43□□□□□ -0.42
COL6A1-201ENST00000361866 CAPZBP47756 277 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 HMGN3Q15651 99 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 OPN5Q6U736 354 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 C5orf46Q6UWT4 87 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.43□□□□□ -0.42
COL6A1-201ENST00000361866 GJC3Q8NFK1 279 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 RGP1Q92546 391 aaPredicted RBP12.43□□□□□ -0.42
COL6A1-201ENST00000361866 MRPL38Q96DV4 380 aaKnown RBP12.43□□□□□ -0.42
COL6A1-201ENST00000361866 SUCNR1Q9BXA5 334 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 RASL12Q9NYN1 266 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 AMDHD2Q9Y303 409 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 MRPS18BQ9Y676 258 aaKnown RBP12.43□□□□□ -0.42
COL6A1-201ENST00000361866 CEP350Q5VT06 3117 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 ICE1Q9Y2F5 2266 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 DUS4LO95620 317 aaKnown RBP12.43□□□□□ -0.42
COL6A1-201ENST00000361866 FABP1P07148 127 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 EDN3P14138 238 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 MEOX2P50222 304 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 MECP2P51608 486 aaKnown RBP12.43□□□□□ -0.42
COL6A1-201ENST00000361866 MOGAT2Q3SYC2 334 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 ATG4DQ86TL0 474 aaPredicted RBP12.43□□□□□ -0.42
COL6A1-201ENST00000361866 SLC38A9Q8NBW4 561 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 OR5AP2Q8NGF4 316 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 RXFP4Q8TDU9 374 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 GPX8Q8TED1 209 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 RBMXL1Q96E39 390 aaKnown RBP12.43□□□□□ -0.42
COL6A1-201ENST00000361866 C17orf51A8MQB3 221 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 CTSBP07858 339 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 ERGP11308 486 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 HOXC12P31275 282 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 NKX2-1P43699 371 aaPredicted RBP12.43□□□□□ -0.42
COL6A1-201ENST00000361866 OR3A4PP47883 348 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 SLC37A1P57057 533 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 UQCC3Q6UW78 93 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 LCN15Q6UWW0 184 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 OBP2AQ9NY56 170 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 HS3ST3A1Q9Y663 406 aa12.43□□□□□ -0.42
COL6A1-201ENST00000361866 SPRY1O43609 319 aaPredicted RBP12.42□□□□□ -0.42
COL6A1-201ENST00000361866 HLA-DOBP13765 273 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 TLE1Q04724 770 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 TMEM268Q5VZI3 342 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 MED9Q9NWA0 146 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 AK3Q9UIJ7 227 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 PNPP00491 289 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 PTAFRP25105 342 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 KIR3DL2P43630 455 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 RPS4XP62701 263 aaKnown RBP12.42□□□□□ -0.42
COL6A1-201ENST00000361866 MKXQ8IYA7 352 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 ZNF561Q8N587 486 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 ZDHHC22Q8N966 263 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 SOSTQ9BQB4 213 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 VSIG4Q9Y279 399 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 A0A1B0GX78 115 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 TAAR5O14804 337 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 HPNP05981 417 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 ZNF266Q14584 549 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 GUK1Q16774 197 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 FAM109BQ6ICB4 259 aaPredicted RBP12.42□□□□□ -0.42
COL6A1-201ENST00000361866 Q6ZS52 159 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 C6orf201Q7Z4U5 140 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 ARRDC1Q8N5I2 433 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 MMP26Q9NRE1 261 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 ZNF275Q9NSD4 429 aaPredicted RBP12.42□□□□□ -0.42
COL6A1-201ENST00000361866 NECAP2Q9NVZ3 263 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 GNG13Q9P2W3 67 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 H0YIG0 161 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 H3BMH7 237 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 M0R135 149 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 ABCD4O14678 606 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 HSD17B6O14756 317 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 APOBEC1P41238 236 aaKnown RBP12.42□□□□□ -0.42
COL6A1-201ENST00000361866 GAS1P54826 345 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 NKAIN1Q4KMZ8 207 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 ZNF100Q8IYN0 542 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 DTWD2Q8NBA8 298 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 SEMA6DQ8NFY4 1073 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 ZNF799Q96GE5 643 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 USB1Q9BQ65 265 aaKnown RBP12.42□□□□□ -0.42
COL6A1-201ENST00000361866 FBXL17Q9UF56 701 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 ICAM5Q9UMF0 924 aa12.42□□□□□ -0.42
COL6A1-201ENST00000361866 CNOT1A5YKK6 2376 aaKnown RBP12.41□□□□□ -0.42
COL6A1-201ENST00000361866 FRG2CA6NGY1 282 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 MBTPS2O43462 519 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 TMEM127O75204 238 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 GSTP1P09211 210 aaKnown RBP12.41□□□□□ -0.42
COL6A1-201ENST00000361866 HIST1H1DP16402 221 aaKnown RBP12.41□□□□□ -0.42
COL6A1-201ENST00000361866 TSPO2Q5TGU0 170 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 CLEC18BQ6UXF7 455 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 MISPQ8IVT2 679 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 ROBO4Q8WZ75 1007 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 SGK3Q96BR1 496 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 PRRX2Q99811 253 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 SLC17A5Q9NRA2 495 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 GAB2Q9UQC2 676 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 MYLKQ15746 1914 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 SPTY2D1-AS1A0A0U1RR47 76 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 hCG_1809904A0A1W2PP81 198 aa12.41□□□□□ -0.42
COL6A1-201ENST00000361866 A0A1W2PR64 198 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms