RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 GAB2Q9UQC2 676 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 C7orf66A4D0T2 115 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 OGG1O15527 345 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 ICOSLGO75144 302 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 IGFBP1P08833 259 aaPredicted RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 PTGER1P34995 402 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 CSNK1EP49674 416 aaKnown RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 MAT1AQ00266 395 aaKnown RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 TMEM65Q6PI78 240 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 LINC00596Q86U02 117 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 ZDHHC23Q8IYP9 409 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 HHIPQ96QV1 700 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 SLC22A13Q9Y226 551 aa9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 MRPS2Q9Y399 296 aaKnown RBP9.28□□□□□ -0.92
CCDC88A-202ENST00000336838 APC2O95996 2303 aa9.27□□□□□ -0.92
CCDC88A-202ENST00000336838 UBE2G2P60604 165 aa9.27□□□□□ -0.92
CCDC88A-202ENST00000336838 NAAAQ02083 359 aa9.27□□□□□ -0.92
CCDC88A-202ENST00000336838 ATP6V1FQ16864 119 aa9.27□□□□□ -0.92
CCDC88A-202ENST00000336838 RPS4Y2Q8TD47 263 aa9.27□□□□□ -0.92
CCDC88A-202ENST00000336838 DOCK11Q5JSL3 2073 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 LRP3O75074 770 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 PRKRAO75569 313 aaKnown RBP9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 TPPP2P59282 170 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 SLC10A1Q14973 349 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 BATFQ16520 125 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 ST3GAL2Q16842 350 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 CXXC1Q9P0U4 656 aaPredicted RBP9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 SSUH2Q9Y2M2 353 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 AQP7P3A6NL99 342 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 H3BQ06 376 aaPredicted RBP9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 MPC2O95563 127 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 DMKNQ6E0U4 476 aaPredicted RBP9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 ADAM5Q6NVV9 412 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 PRSS54Q6PEW0 395 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 OSR2Q8N2R0 312 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 OR51E1Q8TCB6 317 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 SLC35E1Q96K37 410 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 SLCO1C1Q9NYB5 712 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 NME2P1O60361 137 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 NCR3LG1Q68D85 454 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 SCMH1Q96GD3 660 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 ZMAT3Q9HA38 289 aaKnown RBP9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 GNG13Q9P2W3 67 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 CCDC187A0A096LP49 1063 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 PMS2P1A4D2B8 440 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 ZNF732B4DXR9 585 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 QDPRP09417 244 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 EIF3IQ13347 325 aaKnown RBP9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 MLF2Q15773 248 aaPredicted RBP9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 DEFB119Q8N690 84 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 OR8D4Q8NGM9 314 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 LHX4Q969G2 390 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 NEIL1Q96FI4 390 aaPredicted RBP9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 PRDM7Q9NQW5 492 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 DUXBA0A1W2PPF3 345 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 CYTIPO60759 359 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 FBP1P09467 338 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 PPP1CBP62140 327 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 DBX2Q6ZNG2 339 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 GPR32P1Q8NGA4 272 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 OR4F5Q8NH21 305 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 SPACA9Q96E40 222 aaPredicted RBP9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 OR4F4Q96R69 305 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 KLK11Q9UBX7 282 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 ALG1L2C9J202 215 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 FCMRO60667 390 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 IGF2P01344 180 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 OR5D18Q8NGL1 313 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 GPR137Q96N19 417 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 SIGLEC11Q96RL6 698 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 PRRX2Q99811 253 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 LRP12Q9Y561 859 aa9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 YTHDF2Q9Y5A9 579 aaKnown RBP9.27□□□□□ -0.93
CCDC88A-202ENST00000336838 TOX3O15405 576 aaPredicted RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 FUT3P21217 361 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 OR5M10Q6IEU7 315 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 TMEM182Q6ZP80 229 aaPredicted RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 NARFLQ9H6Q4 476 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 MED9Q9NWA0 146 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 LEUTXA8MZ59 168 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 IDSB3KWA1 339 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 HIST1H1DP16402 221 aaKnown RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 GPR12P47775 334 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 SUMO1P63165 101 aaKnown RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 LGALSLQ3ZCW2 172 aaPredicted RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 RPS19BP1Q86WX3 136 aaKnown RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 FAM58AQ8N1B3 248 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 BVESQ8NE79 360 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 NUDT16L1Q9BRJ7 211 aaKnown RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 CCL27Q9Y4X3 112 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 LINC01553A4QN01 128 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 FITM1A5D6W6 292 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 CT45A10P0DMU9 189 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 GGTLC2Q14390 218 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 BTLAQ7Z6A9 289 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 OR1N1Q8NGS0 311 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 COX14Q96I36 57 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 NUDT22Q9BRQ3 303 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 UCK1Q9HA47 277 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 LPAR3Q9UBY5 353 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms