RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 IGHV3-43DP0DP04 118 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 SMAD4Q13485 552 aaKnown RBP11.39□□□□□ -0.59
SDC3-201ENST00000336798 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 WDR88Q6ZMY6 472 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 OSR2Q8N2R0 312 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 DUS3LQ96G46 650 aaKnown RBP11.39□□□□□ -0.59
SDC3-201ENST00000336798 ARHGDIGQ99819 225 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 ADAT1Q9BUB4 502 aaKnown RBP11.39□□□□□ -0.59
SDC3-201ENST00000336798 HES4Q9HCC6 221 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 A0A1W2PPQ1 181 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 OR5H8P0DN80 308 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 GPX2P18283 190 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 ZP3P21754 424 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 USF1P22415 310 aaPredicted RBP11.39□□□□□ -0.59
SDC3-201ENST00000336798 ZBTB25P24278 435 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 ERVFC1-1P60608 527 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 TUSC1Q2TAM9 212 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 ZPBPQ9BS86 351 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 TXNIPQ9H3M7 391 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 R4GN57 208 aa11.39□□□□□ -0.59
SDC3-201ENST00000336798 LRRC3CA6NJW4 275 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 M0R1X1 148 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 PPICP45877 212 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 LYPD8Q6UX82 237 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 DLEU7Q6UYE1 221 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 OR5AP2Q8NGF4 316 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 TRIM77I1YAP6 450 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 CTSLP07711 333 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 SRFP11831 508 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 OPRK1P41145 380 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 DUSP8Q13202 625 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 MYEOVQ96EZ4 313 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 DOK5Q9P104 306 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 ICAM5Q9UMF0 924 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 ACOT8O14734 319 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 IL5P05113 134 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 C9orf50Q5SZB4 431 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 MOB1BQ7L9L4 216 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 FBXL6Q8N531 539 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 OR2V1Q8NHB1 315 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 CMC2Q9NRP2 79 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 IGKV3-7A0A075B6H7 116 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 UPK1AO00322 258 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 CST7O76096 145 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 KRASP01116 189 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 PMCHP20382 165 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 Q7L0L9 218 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 ADPRHL1Q8NDY3 354 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 LFNGQ8NES3 379 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 ASIC5Q9NY37 505 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 GPX5O75715 221 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 FABP4P15090 132 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 ZNF25P17030 456 aaPredicted RBP11.38□□□□□ -0.59
SDC3-201ENST00000336798 CALCRP30988 508 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 SMIM21Q3B7S5 101 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 ZNF766Q5HY98 468 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 CD276Q5ZPR3 534 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 OR1L4Q8NGR5 311 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 FBXO34Q9NWN3 711 aa11.38□□□□□ -0.59
SDC3-201ENST00000336798 TRGV5A0A0B4J1U4 118 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 RAF1P04049 648 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 SULT1A3P0DMM9 295 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 SULT1A4P0DMN0 295 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 MGMTP16455 207 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 RPL7P18124 248 aaKnown RBP11.37□□□□□ -0.59
SDC3-201ENST00000336798 PRSS12P56730 875 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 PCBP4P57723 403 aaKnown RBP11.37□□□□□ -0.59
SDC3-201ENST00000336798 CDK5Q00535 292 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 DHRS4L2Q6PKH6 230 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 LILRB1Q8NHL6 650 aaPredicted RBP11.37□□□□□ -0.59
SDC3-201ENST00000336798 RFESDQ8TAC1 157 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 ZNF586Q9NXT0 402 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 TRAPPC4Q9Y296 219 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 IGLV3-10A0A075B6K4 115 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 A0A1W2PPC4 97 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 MED19A0JLT2 244 aaPredicted RBP11.37□□□□□ -0.59
SDC3-201ENST00000336798 PLRG1O43660 514 aaKnown RBP11.37□□□□□ -0.59
SDC3-201ENST00000336798 OR3A4PP47883 348 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 FABP5Q01469 135 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 TCTN1Q2MV58 587 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 SP6Q3SY56 376 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 STAC2Q6ZMT1 411 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 OR4S1Q8NGB4 309 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 MEGF10Q96KG7 1140 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 PIGMQ9H3S5 423 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 OR2M5A3KFT3 312 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 H0YIG0 161 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 GATCO43716 136 aaKnown RBP11.37□□□□□ -0.59
SDC3-201ENST00000336798 KIAA1958Q8N8K9 716 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 OR52N4Q8NGI2 321 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 MOB1AQ9H8S9 216 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 RAB18Q9NP72 206 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 DOT1LQ8TEK3 1739 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 GYPAP02724 150 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 OR4E1P0C645 316 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 SPNP16150 400 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 RAB1AP62820 205 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 GNRHR2Q96P88 292 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 SPNS1Q9H2V7 528 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 SPP1P10451 314 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms