RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 PGAP1Q75T13 922 aa10.63□□□□□ -0.71
USHBP1-201ENST00000252597 C6orf201Q7Z4U5 140 aa10.63□□□□□ -0.71
USHBP1-201ENST00000252597 PAQR4Q8N4S7 273 aaPredicted RBP10.63□□□□□ -0.71
USHBP1-201ENST00000252597 NXT1Q9UKK6 140 aaKnown RBP10.63□□□□□ -0.71
USHBP1-201ENST00000252597 DIDO1Q9BTC0 2240 aaKnown RBP10.62□□□□□ -0.71
USHBP1-201ENST00000252597 ZNF726A6NNF4 738 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 MBTPS2O43462 519 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 FCGR2AP12318 317 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 CALCRP30988 508 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 FCGR2CP31995 323 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 FOXF1Q12946 379 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 LPCAT3Q6P1A2 487 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.62□□□□□ -0.71
USHBP1-201ENST00000252597 IP6K3Q96PC2 410 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 GPHA2Q96T91 129 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 SLCO5A1Q9H2Y9 848 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 C5orf66Q9H5L9 145 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 DOCK7Q96N67 2140 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 SPTY2D1-AS1A0A0U1RR47 76 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 LINC00587B1AMM8 73 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 FAHP16930 419 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 BLKP51451 505 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 RIPPLY1Q0D2K3 151 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 FABP9Q0Z7S8 132 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 TAF9Q16594 264 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 ABCA11PQ4W5N1 156 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 TMEM128Q5BJH2 165 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 TDHQ8IZJ6 230 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 MFSD8Q8NHS3 518 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 GPBAR1Q8TDU6 330 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 ST7LQ8TDW4 575 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 MRGPRFQ96AM1 343 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 RNF126Q9BV68 326 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 RBM24Q9BX46 236 aaKnown RBP10.62□□□□□ -0.71
USHBP1-201ENST00000252597 BCL2L14Q9BZR8 327 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 ALX4Q9H161 411 aaPredicted RBP10.62□□□□□ -0.71
USHBP1-201ENST00000252597 PLEKHJ1Q9NW61 149 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 PCDHGA1Q9Y5H4 931 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 FLVCR1Q9Y5Y0 555 aa10.62□□□□□ -0.71
USHBP1-201ENST00000252597 A0A1W2PPH5 198 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 VSTM2BA6NLU5 285 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 TNFRSF10CO14798 259 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 RAD51DO75771 328 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 SNAPC5O75971 98 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 APOC1P02654 83 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 POU2F2P09086 479 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 KLK2P20151 261 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 CSNK1EP49674 416 aaKnown RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 THRSPQ92748 146 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 SGK3Q96BR1 496 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 NRIP2Q9BQI9 281 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 WWTR1Q9GZV5 400 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 RAB33BQ9H082 229 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 ZNF304Q9HCX3 659 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 G6PC2Q9NQR9 355 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 CLDN16Q9Y5I7 305 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 MMP24Q9Y5R2 645 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 C5orf63A6NC05 138 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 C9JQL5 133 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 HSPB6O14558 160 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 MTRF1O75570 445 aaKnown RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 CD8AP01732 235 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 ZNF44P15621 663 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 ANOS1P23352 680 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 RFC3P40938 356 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 TNFRSF4P43489 277 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 ISXQ2M1V0 245 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 EIF2S3LQ2VIR3 472 aaKnown RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 TMEM176BQ3YBM2 270 aaPredicted RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 PLAC9Q5JTB6 97 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 GRINAQ7Z429 371 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 C1QL2Q7Z5L3 287 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 APCDD1LQ8NCL9 501 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 OR5L1Q8NGL2 311 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 FNDC9Q8TBE3 224 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 ZNF2Q9BSG1 426 aaPredicted RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 NAA11Q9BSU3 229 aaPredicted RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 URM1Q9BTM9 101 aaKnown RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 ZNF576Q9H609 170 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 A0A1B0GTI1 187 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 NUDT21O43809 227 aaKnown RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 IFNA21P01568 189 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 RPL12P30050 165 aaKnown RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 CAV2P51636 162 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 CYCSP99999 105 aaKnown RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 IKZF1Q13422 519 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 OGFOD3Q6PK18 319 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 H1FNTQ75WM6 255 aaPredicted RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 FAM213BQ8TBF2 198 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 MRPL38Q96DV4 380 aaKnown RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 SCARF2Q96GP6 870 aaPredicted RBP10.61□□□□□ -0.71
USHBP1-201ENST00000252597 PPP4R1LQ9P1A2 415 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 FBXL17Q9UF56 701 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 SHANK1Q9Y566 2161 aa10.61□□□□□ -0.71
USHBP1-201ENST00000252597 NME1P15531 152 aaKnown RBP10.6□□□□□ -0.71
USHBP1-201ENST00000252597 RPS10P46783 165 aaKnown RBP10.6□□□□□ -0.71
USHBP1-201ENST00000252597 CAPZBP47756 277 aa10.6□□□□□ -0.71
USHBP1-201ENST00000252597 RGS19P49795 217 aa10.6□□□□□ -0.71
USHBP1-201ENST00000252597 MECP2P51608 486 aaKnown RBP10.6□□□□□ -0.71
USHBP1-201ENST00000252597 MIDNQ504T8 468 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms