RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 LIMS3P0CW19 117 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 LIMS4P0CW20 117 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 CCL7P80098 99 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 EIF3IQ13347 325 aaKnown RBP12.19□□□□□ -0.46
SF3A1-201ENST00000215793 TP53I13Q8NBR0 393 aaPredicted RBP12.19□□□□□ -0.46
SF3A1-201ENST00000215793 ZNF784Q8NCA9 323 aaPredicted RBP12.19□□□□□ -0.46
SF3A1-201ENST00000215793 ORAI1Q96D31 301 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 NUP205Q92621 2012 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 SERTM1A2A2V5 107 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 SEC14L6B5MCN3 397 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 CYC1P08574 325 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 OR1J1Q8NGS3 322 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 ZNF251Q9BRH9 671 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 UQCC2Q9BRT2 126 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 CTDSP1Q9GZU7 261 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 MAGT1Q9H0U3 335 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 FBP1P09467 338 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 RFC3P40938 356 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 MYBPHQ13203 477 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 RAB35Q15286 201 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 HLA-BQ31612 363 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 C17orf107Q6ZR85 190 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 OR2W3Q7Z3T1 314 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 OR13D1Q8NGV5 346 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 WDR34Q96EX3 536 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 EVPLQ92817 2033 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 PLCH1Q4KWH8 1693 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 TRGV10A0A0A0MS01 117 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 TRAV17A0A0B4J275 112 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 CRYABP02511 175 aaKnown RBP12.19□□□□□ -0.46
SF3A1-201ENST00000215793 TNFRSF1AP19438 455 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 ZBTB25P24278 435 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 EMP3P54852 163 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 GNG3P63215 75 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 IL11RAQ14626 422 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 LILRA6Q6PI73 481 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 UBE3DQ7Z6J8 389 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 EXTL1Q92935 676 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 ARRDC1-AS1Q9H2J1 176 aa12.19□□□□□ -0.46
SF3A1-201ENST00000215793 ANKRD36CQ5JPF3 1778 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 GPR37O15354 613 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 GP1BAP07359 652 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 FUT7Q11130 342 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 OTPQ5XKR4 325 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 ZNF793Q6ZN11 406 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 FBXL14Q8N1E6 418 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 ERGIC1Q969X5 290 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 PELI1Q96FA3 418 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 IER2Q9BTL4 223 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 SLC6A13Q9NSD5 602 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 OR2W5A6NFC9 320 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 CYTIPO60759 359 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 WNT3P56703 355 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 KHDC1LQ5JSQ8 128 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 RPL7L1Q6DKI1 246 aaKnown RBP12.18□□□□□ -0.46
SF3A1-201ENST00000215793 CARFQ8N187 725 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 OR4C3Q8NH37 302 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 RXFP4Q8TDU9 374 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 ALS2Q96Q42 1657 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 ZNF586Q9NXT0 402 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 PLEKHB1Q9UF11 243 aaPredicted RBP12.18□□□□□ -0.46
SF3A1-201ENST00000215793 RNF24Q9Y225 148 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 TMEM30CPA0ZSE6 113 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 PLPP2O43688 288 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 SCAND1P57086 179 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 MAMSTRQ6ZN01 415 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 ZDHHC22Q8N966 263 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 M1APQ8TC57 530 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 TMEM231Q9H6L2 316 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 GAR1Q9NY12 217 aaKnown RBP12.18□□□□□ -0.46
SF3A1-201ENST00000215793 TRGV8A0A0C4DH27 118 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 LINC01565O15544 149 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 CDAP32320 146 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 NOVA1P51513 510 aaKnown RBP12.18□□□□□ -0.46
SF3A1-201ENST00000215793 HMGA2P52926 109 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 GLDNQ6ZMI3 551 aaPredicted RBP12.18□□□□□ -0.46
SF3A1-201ENST00000215793 MOB1BQ7L9L4 216 aa12.18□□□□□ -0.46
SF3A1-201ENST00000215793 TRGV5A0A0B4J1U4 118 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 ASPDHA6ND91 283 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 SPP1P10451 314 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 SLC25A6P12236 298 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 RAE1P78406 368 aaKnown RBP12.17□□□□□ -0.46
SF3A1-201ENST00000215793 GSG1Q2KHT4 349 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 ADPRHL1Q8NDY3 354 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 MFRPQ9BY79 579 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 SLIRPQ9GZT3 109 aaKnown RBP12.17□□□□□ -0.46
SF3A1-201ENST00000215793 OCEL1Q9H607 264 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 OCIAD1Q9NX40 245 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 TJP1Q07157 1748 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 RFPL4AA6NLU0 287 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 RFPL4AL1F8VTS6 287 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 G3V3Q6 166 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 LY86O95711 162 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 SULT1A3P0DMM9 295 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 SULT1A4P0DMN0 295 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 ZNF117Q03924 483 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 NCR3LG1Q68D85 454 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 Q6ZS52 159 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 SLX4Q8IY92 1834 aa12.17□□□□□ -0.46
SF3A1-201ENST00000215793 PYCARD-AS1I3L0S3 204 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms