RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 MUC3BQ9H195 1237 aa8.56□□□□□ -1.04
CD44-239ENST00000639002 SRA1Q9HD15 236 aaKnown RBP8.56□□□□□ -1.04
CD44-239ENST00000639002 CCDC87Q9NVE4 849 aa8.56□□□□□ -1.04
CD44-239ENST00000639002 KCNK4Q9NYG8 393 aa8.56□□□□□ -1.04
CD44-239ENST00000639002 FAM13AO94988 1023 aa8.55□□□□□ -1.04
CD44-239ENST00000639002 EPHA1P21709 976 aa8.55□□□□□ -1.04
CD44-239ENST00000639002 CES1P23141 567 aa8.55□□□□□ -1.04
CD44-239ENST00000639002 SF3B2Q13435 895 aaKnown RBP8.55□□□□□ -1.04
CD44-239ENST00000639002 MAP4K3Q8IVH8 894 aa8.55□□□□□ -1.04
CD44-239ENST00000639002 DZIP1LQ8IYY4 767 aaKnown RBP8.55□□□□□ -1.04
CD44-239ENST00000639002 HHIPQ96QV1 700 aa8.55□□□□□ -1.04
CD44-239ENST00000639002 DZANK1Q9NVP4 752 aa8.55□□□□□ -1.04
CD44-239ENST00000639002 USTQ9Y2C2 406 aa8.55□□□□□ -1.04
CD44-239ENST00000639002 TNFRSF21O75509 655 aa8.54□□□□□ -1.04
CD44-239ENST00000639002 ABL1P00519 1130 aa8.54□□□□□ -1.04
CD44-239ENST00000639002 PCSK2P16519 638 aa8.54□□□□□ -1.04
CD44-239ENST00000639002 CDC25BP30305 580 aa8.54□□□□□ -1.04
CD44-239ENST00000639002 MRPL18Q9H0U6 180 aaKnown RBP8.54□□□□□ -1.04
CD44-239ENST00000639002 AKTIPQ9H8T0 292 aa8.54□□□□□ -1.04
CD44-239ENST00000639002 EREGO14944 169 aa8.53□□□□□ -1.04
CD44-239ENST00000639002 WISP1O95388 367 aa8.53□□□□□ -1.04
CD44-239ENST00000639002 ZMYM1Q5SVZ6 1142 aa8.53□□□□□ -1.04
CD44-239ENST00000639002 AGGF1Q8N302 714 aaeCLIP8.53□□□□□ -1.04
CD44-239ENST00000639002 ARID3AQ99856 593 aa8.53□□□□□ -1.04
CD44-239ENST00000639002 FOXD3Q9UJU5 478 aaPredicted RBP8.53□□□□□ -1.04
CD44-239ENST00000639002 FSCN2O14926 492 aa8.52□□□□□ -1.05
CD44-239ENST00000639002 AAMPQ13685 434 aa8.52□□□□□ -1.05
CD44-239ENST00000639002 Q6ZS46 218 aa8.52□□□□□ -1.05
CD44-239ENST00000639002 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.52□□□□□ -1.05
CD44-239ENST00000639002 GJD3Q8N144 294 aa8.52□□□□□ -1.05
CD44-239ENST00000639002 CARD10Q9BWT7 1032 aa8.52□□□□□ -1.05
CD44-239ENST00000639002 DDX3YO15523 660 aaKnown RBP8.51□□□□□ -1.05
CD44-239ENST00000639002 ICMTO60725 284 aa8.51□□□□□ -1.05
CD44-239ENST00000639002 PTPRAP18433 802 aa8.51□□□□□ -1.05
CD44-239ENST00000639002 CD68P34810 354 aaPredicted RBP8.51□□□□□ -1.05
CD44-239ENST00000639002 SERPINB4P48594 390 aa8.51□□□□□ -1.05
CD44-239ENST00000639002 KLHDC7BQ96G42 594 aa8.51□□□□□ -1.05
CD44-239ENST00000639002 MTMR7Q9Y216 660 aa8.51□□□□□ -1.05
CD44-239ENST00000639002 PDE2AO00408 941 aaPredicted RBP8.5□□□□□ -1.05
CD44-239ENST00000639002 ADAM11O75078 769 aa8.5□□□□□ -1.05
CD44-239ENST00000639002 TTC16Q8NEE8 873 aa8.5□□□□□ -1.05
CD44-239ENST00000639002 PMEPA1Q969W9 287 aa8.5□□□□□ -1.05
CD44-239ENST00000639002 NXPE3Q969Y0 559 aa8.5□□□□□ -1.05
CD44-239ENST00000639002 UBL7Q96S82 380 aaPredicted RBP8.5□□□□□ -1.05
CD44-239ENST00000639002 EGFL7Q9UHF1 273 aa8.5□□□□□ -1.05
CD44-239ENST00000639002 PEAR1Q5VY43 1037 aaPredicted RBP8.49□□□□□ -1.05
CD44-239ENST00000639002 HGSNATQ68CP4 663 aa8.49□□□□□ -1.05
CD44-239ENST00000639002 TMEM102Q8N9M5 508 aaPredicted RBP8.49□□□□□ -1.05
CD44-239ENST00000639002 FOXD4L4Q8WXT5 416 aaPredicted RBP8.49□□□□□ -1.05
CD44-239ENST00000639002 ZKSCAN3Q9BRR0 538 aa8.49□□□□□ -1.05
CD44-239ENST00000639002 SOX13Q9UN79 622 aa8.49□□□□□ -1.05
CD44-239ENST00000639002 PHACTR2O75167 634 aa8.48□□□□□ -1.05
CD44-239ENST00000639002 USP5P45974 858 aa8.48□□□□□ -1.05
CD44-239ENST00000639002 PRR23CQ6ZRP0 262 aa8.48□□□□□ -1.05
CD44-239ENST00000639002 KIAA1211Q6ZU35 1233 aa8.48□□□□□ -1.05
CD44-239ENST00000639002 RETREG2Q8NC44 543 aa8.48□□□□□ -1.05
CD44-239ENST00000639002 SNX29Q8TEQ0 813 aa8.48□□□□□ -1.05
CD44-239ENST00000639002 OSMRQ99650 979 aa8.48□□□□□ -1.05
CD44-239ENST00000639002 ZFYVE28Q9HCC9 887 aa8.48□□□□□ -1.05
CD44-239ENST00000639002 LATS2Q9NRM7 1088 aa8.48□□□□□ -1.05
CD44-239ENST00000639002 TIMELESSQ9UNS1 1208 aa8.48□□□□□ -1.05
CD44-239ENST00000639002 H3BRJ5 948 aa8.47□□□□□ -1.05
CD44-239ENST00000639002 ARHGAP4P98171 946 aa8.47□□□□□ -1.05
CD44-239ENST00000639002 EHHADHQ08426 723 aa8.47□□□□□ -1.05
CD44-239ENST00000639002 TXNDC2Q86VQ3 553 aa8.47□□□□□ -1.05
CD44-239ENST00000639002 KLHL23Q8NBE8 558 aa8.47□□□□□ -1.05
CD44-239ENST00000639002 DCAF11Q8TEB1 546 aa8.47□□□□□ -1.05
CD44-239ENST00000639002 UBASH3BQ8TF42 649 aa8.46□□□□□ -1.06
CD44-239ENST00000639002 SEC31BQ9NQW1 1179 aa8.46□□□□□ -1.06
CD44-239ENST00000639002 H3BRB1 525 aa8.45□□□□□ -1.06
CD44-239ENST00000639002 POLR3DP05423 398 aaPredicted RBP8.45□□□□□ -1.06
CD44-239ENST00000639002 GLB1P16278 677 aa8.45□□□□□ -1.06
CD44-239ENST00000639002 PIP4K2BP78356 416 aa8.45□□□□□ -1.06
CD44-239ENST00000639002 FAM117BQ6P1L5 589 aa8.45□□□□□ -1.06
CD44-239ENST00000639002 ACAD11Q709F0 780 aa8.45□□□□□ -1.06
CD44-239ENST00000639002 VN1R5Q7Z5H4 357 aa8.45□□□□□ -1.06
CD44-239ENST00000639002 ARMC10Q8N2F6 343 aa8.45□□□□□ -1.06
CD44-239ENST00000639002 TUT1Q9H6E5 874 aaKnown RBP8.45□□□□□ -1.06
CD44-239ENST00000639002 SOX1O00570 391 aaPredicted RBP8.44□□□□□ -1.06
CD44-239ENST00000639002 EDN3P14138 238 aa8.44□□□□□ -1.06
CD44-239ENST00000639002 WNT8BQ93098 351 aa8.44□□□□□ -1.06
CD44-239ENST00000639002 BHLHE41Q9C0J9 482 aaPredicted RBP8.44□□□□□ -1.06
CD44-239ENST00000639002 OSGEPQ9NPF4 335 aa8.44□□□□□ -1.06
CD44-239ENST00000639002 AMOTL2Q9Y2J4 779 aa8.44□□□□□ -1.06
CD44-239ENST00000639002 DUOXA2Q1HG44 320 aa8.43□□□□□ -1.06
CD44-239ENST00000639002 B4GALNT3Q6L9W6 998 aa8.43□□□□□ -1.06
CD44-239ENST00000639002 BSNDQ8WZ55 320 aa8.43□□□□□ -1.06
CD44-239ENST00000639002 IGHA2P01877 340 aa8.42□□□□□ -1.06
CD44-239ENST00000639002 CABP4P57796 275 aa8.42□□□□□ -1.06
CD44-239ENST00000639002 ARTNQ5T4W7 220 aa8.42□□□□□ -1.06
CD44-239ENST00000639002 USPL1Q5W0Q7 1092 aa8.42□□□□□ -1.06
CD44-239ENST00000639002 ERICH6Q7L0X2 663 aa8.42□□□□□ -1.06
CD44-239ENST00000639002 GLYCTKQ8IVS8 523 aa8.42□□□□□ -1.06
CD44-239ENST00000639002 SLC7A3Q8WY07 619 aa8.42□□□□□ -1.06
CD44-239ENST00000639002 METTL12A8MUP2 240 aa8.41□□□□□ -1.06
CD44-239ENST00000639002 NLRP12P59046 1061 aa8.41□□□□□ -1.06
CD44-239ENST00000639002 FAM46AQ96IP4 442 aaKnown RBP8.41□□□□□ -1.06
CD44-239ENST00000639002 BRPF3Q9ULD4 1205 aa8.41□□□□□ -1.06
CD44-239ENST00000639002 A0A1W2PP55 124 aa8.4□□□□□ -1.06
CD44-239ENST00000639002 FSTP19883 344 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 309.2 ms