RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 PA2G4Q9UQ80 394 aaKnown RBP12.28□□□□□ -0.44
CLN3-261ENST00000637686 A0A1B0GUL6 1792 aa12.28□□□□□ -0.44
CLN3-261ENST00000637686 EYA2O00167 538 aa12.27□□□□□ -0.45
CLN3-261ENST00000637686 LMOD1P29536 600 aaPredicted RBP12.27□□□□□ -0.45
CLN3-261ENST00000637686 EPS15P42566 896 aa12.27□□□□□ -0.45
CLN3-261ENST00000637686 GMPSP49915 693 aaPredicted RBP12.27□□□□□ -0.45
CLN3-261ENST00000637686 C20orf194Q5TEA3 1177 aa12.27□□□□□ -0.45
CLN3-261ENST00000637686 PODNQ7Z5L7 613 aa12.27□□□□□ -0.45
CLN3-261ENST00000637686 RBM46Q8TBY0 533 aaKnown RBP12.27□□□□□ -0.45
CLN3-261ENST00000637686 COA1Q9GZY4 146 aa12.27□□□□□ -0.45
CLN3-261ENST00000637686 COG6Q9Y2V7 657 aa12.27□□□□□ -0.45
CLN3-261ENST00000637686 ZBTB12Q9Y330 459 aaPredicted RBP12.27□□□□□ -0.45
CLN3-261ENST00000637686 IRS2Q9Y4H2 1338 aa12.27□□□□□ -0.45
CLN3-261ENST00000637686 SCN4AP35499 1836 aa12.26□□□□□ -0.45
CLN3-261ENST00000637686 EPHX2P34913 555 aa12.26□□□□□ -0.45
CLN3-261ENST00000637686 MTX1Q13505 466 aa12.26□□□□□ -0.45
CLN3-261ENST00000637686 UBE4AQ14139 1066 aa12.26□□□□□ -0.45
CLN3-261ENST00000637686 C15orf52Q6ZUT6 534 aaKnown RBP12.26□□□□□ -0.45
CLN3-261ENST00000637686 ATG9AQ7Z3C6 839 aa12.26□□□□□ -0.45
CLN3-261ENST00000637686 GTF3C3Q9Y5Q9 886 aa12.26□□□□□ -0.45
CLN3-261ENST00000637686 SCN9AQ15858 1988 aa12.26□□□□□ -0.45
CLN3-261ENST00000637686 PNMA6EA0A0J9YXQ4 647 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 USP17L3A6NCW0 530 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 USP17L4A6NCW7 530 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 CIAO1O76071 339 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 PDE8BO95263 885 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 VIL1P09327 827 aaKnown RBP12.25□□□□□ -0.45
CLN3-261ENST00000637686 POTEIP0CG38 1075 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 POTEJP0CG39 1038 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 EAPPQ56P03 285 aaPredicted RBP12.25□□□□□ -0.45
CLN3-261ENST00000637686 USP17L1Q7RTZ2 530 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 VGLL2Q8N8G2 317 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 CRBNQ96SW2 442 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 CD209Q9NNX6 404 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 COPRSQ9NQ92 184 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 GPRC5DQ9NZD1 345 aa12.25□□□□□ -0.45
CLN3-261ENST00000637686 SHTN1A0MZ66 631 aa12.24□□□□□ -0.45
CLN3-261ENST00000637686 GYG1P46976 350 aa12.24□□□□□ -0.45
CLN3-261ENST00000637686 ATP8B2P98198 1209 aa12.24□□□□□ -0.45
CLN3-261ENST00000637686 ZNF804AQ7Z570 1209 aa12.24□□□□□ -0.45
CLN3-261ENST00000637686 SMC1BQ8NDV3 1235 aa12.24□□□□□ -0.45
CLN3-261ENST00000637686 DPF2Q92785 391 aa12.24□□□□□ -0.45
CLN3-261ENST00000637686 FBXW7Q969H0 707 aa12.24□□□□□ -0.45
CLN3-261ENST00000637686 PPP4R2Q9NY27 417 aa12.24□□□□□ -0.45
CLN3-261ENST00000637686 CNOT7Q9UIV1 285 aaKnown RBP12.24□□□□□ -0.45
CLN3-261ENST00000637686 FBXO3Q9UK99 471 aa12.24□□□□□ -0.45
CLN3-261ENST00000637686 RPS12P25398 132 aaKnown RBP12.23□□□□□ -0.45
CLN3-261ENST00000637686 HIBADHP31937 336 aaKnown RBP12.23□□□□□ -0.45
CLN3-261ENST00000637686 IL15P40933 162 aaPredicted RBP12.23□□□□□ -0.45
CLN3-261ENST00000637686 GTF2IP78347 998 aa12.23□□□□□ -0.45
CLN3-261ENST00000637686 PUM3Q15397 648 aaKnown RBP12.23□□□□□ -0.45
CLN3-261ENST00000637686 TTLL5Q6EMB2 1281 aa12.23□□□□□ -0.45
CLN3-261ENST00000637686 RSBN1LQ6PCB5 846 aaPredicted RBP12.23□□□□□ -0.45
CLN3-261ENST00000637686 PNMA8AQ86V59 439 aaPredicted RBP12.23□□□□□ -0.45
CLN3-261ENST00000637686 LDHDQ86WU2 507 aa12.23□□□□□ -0.45
CLN3-261ENST00000637686 MICALL2Q8IY33 904 aa12.23□□□□□ -0.45
CLN3-261ENST00000637686 EXOC6Q8TAG9 804 aa12.23□□□□□ -0.45
CLN3-261ENST00000637686 FAM84BQ96KN1 310 aaPredicted RBP12.23□□□□□ -0.45
CLN3-261ENST00000637686 MXD3Q9BW11 206 aa12.23□□□□□ -0.45
CLN3-261ENST00000637686 ADARB2Q9NS39 739 aaKnown RBP12.23□□□□□ -0.45
CLN3-261ENST00000637686 CEP126Q9P2H0 1117 aa12.23□□□□□ -0.45
CLN3-261ENST00000637686 CLEC11AQ9Y240 323 aa12.23□□□□□ -0.45
CLN3-261ENST00000637686 H7C1D1 291 aa12.22□□□□□ -0.45
CLN3-261ENST00000637686 IL1R1P14778 569 aa12.22□□□□□ -0.45
CLN3-261ENST00000637686 FGFR2P21802 821 aa12.22□□□□□ -0.45
CLN3-261ENST00000637686 FSTL1Q12841 308 aa12.22□□□□□ -0.45
CLN3-261ENST00000637686 POLA2Q14181 598 aa12.22□□□□□ -0.45
CLN3-261ENST00000637686 DACT2Q5SW24 774 aa12.22□□□□□ -0.45
CLN3-261ENST00000637686 STRIP1Q5VSL9 837 aa12.22□□□□□ -0.45
CLN3-261ENST00000637686 CHADLQ6NUI6 762 aa12.22□□□□□ -0.45
CLN3-261ENST00000637686 CEP85Q6P2H3 762 aa12.22□□□□□ -0.45
CLN3-261ENST00000637686 USP50Q70EL3 339 aaPredicted RBP12.22□□□□□ -0.45
CLN3-261ENST00000637686 PSME4Q14997 1843 aa12.21□□□□□ -0.45
CLN3-261ENST00000637686 IFIT1P09914 478 aaKnown RBP12.21□□□□□ -0.45
CLN3-261ENST00000637686 SLC5A1P13866 664 aa12.21□□□□□ -0.45
CLN3-261ENST00000637686 CAVIN4Q5BKX8 364 aa12.21□□□□□ -0.45
CLN3-261ENST00000637686 RBM26Q5T8P6 1007 aaKnown RBP12.21□□□□□ -0.45
CLN3-261ENST00000637686 FBXO33Q7Z6M2 555 aa12.21□□□□□ -0.45
CLN3-261ENST00000637686 VPS37DQ86XT2 251 aa12.21□□□□□ -0.45
CLN3-261ENST00000637686 AGBL3Q8NEM8 1001 aa12.21□□□□□ -0.45
CLN3-261ENST00000637686 TDRD7Q8NHU6 1098 aaKnown RBP12.21□□□□□ -0.45
CLN3-261ENST00000637686 SSH3Q8TE77 659 aa12.21□□□□□ -0.45
CLN3-261ENST00000637686 LPIN2Q92539 896 aa12.21□□□□□ -0.45
CLN3-261ENST00000637686 GMLQ99445 158 aa12.21□□□□□ -0.45
CLN3-261ENST00000637686 ZBTB40Q9NUA8 1239 aa12.21□□□□□ -0.45
CLN3-261ENST00000637686 JAG2Q9Y219 1238 aa12.21□□□□□ -0.45
CLN3-261ENST00000637686 BCAMP50895 628 aa12.2□□□□□ -0.46
CLN3-261ENST00000637686 HIRAP54198 1017 aaPredicted RBP12.2□□□□□ -0.46
CLN3-261ENST00000637686 IRX6P78412 446 aaPredicted RBP12.2□□□□□ -0.46
CLN3-261ENST00000637686 TFCP2Q12800 502 aa12.2□□□□□ -0.46
CLN3-261ENST00000637686 G3BP1Q13283 466 aaKnown RBP eCLIP12.2□□□□□ -0.46
CLN3-261ENST00000637686 ATP2B3Q16720 1220 aa12.2□□□□□ -0.46
CLN3-261ENST00000637686 SAMD7Q7Z3H4 446 aa12.2□□□□□ -0.46
CLN3-261ENST00000637686 TRPM4Q8TD43 1214 aa12.2□□□□□ -0.46
CLN3-261ENST00000637686 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.2□□□□□ -0.46
CLN3-261ENST00000637686 SURF6O75683 361 aaKnown RBP12.19□□□□□ -0.46
CLN3-261ENST00000637686 SASH1O94885 1247 aa12.19□□□□□ -0.46
CLN3-261ENST00000637686 EGFRP00533 1210 aa12.19□□□□□ -0.46
CLN3-261ENST00000637686 USP17L8P0C7I0 530 aa12.19□□□□□ -0.46
CLN3-261ENST00000637686 TBC1D10BQ4KMP7 808 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms