RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 ARID4AP29374 1257 aaPredicted RBP23.09■■□□□ 1.29
CLN3-258ENST00000637184 FKBP4Q02790 459 aaKnown RBP eCLIP23.09■■□□□ 1.29
CLN3-258ENST00000637184 CAVIN4Q5BKX8 364 aa23.09■■□□□ 1.29
CLN3-258ENST00000637184 EDC3Q96F86 508 aaKnown RBP23.09■■□□□ 1.29
CLN3-258ENST00000637184 FSD1Q9BTV5 496 aa23.09■■□□□ 1.29
CLN3-258ENST00000637184 PAG1Q9NWQ8 432 aa23.09■■□□□ 1.29
CLN3-258ENST00000637184 NSFL1CQ9UNZ2 370 aaKnown RBP23.09■■□□□ 1.29
CLN3-258ENST00000637184 ATP6V0A2Q9Y487 856 aa23.09■■□□□ 1.29
CLN3-258ENST00000637184 LRRC37AA6NMS7 1700 aa23.09■■□□□ 1.29
CLN3-258ENST00000637184 BCAMP50895 628 aa23.09■■□□□ 1.29
CLN3-258ENST00000637184 GPSM2P81274 684 aa23.09■■□□□ 1.29
CLN3-258ENST00000637184 SLC51AQ86UW1 340 aa23.09■■□□□ 1.29
CLN3-258ENST00000637184 CNKSR1Q969H4 720 aa23.09■■□□□ 1.29
CLN3-258ENST00000637184 TMX4Q9H1E5 349 aaPredicted RBP23.09■■□□□ 1.29
CLN3-258ENST00000637184 UPF2Q9HAU5 1272 aaKnown RBP23.09■■□□□ 1.29
CLN3-258ENST00000637184 GOLIM4O00461 696 aa23.08■■□□□ 1.29
CLN3-258ENST00000637184 MCAMP43121 646 aa23.08■■□□□ 1.29
CLN3-258ENST00000637184 MFAP1P55081 439 aaKnown RBP23.08■■□□□ 1.29
CLN3-258ENST00000637184 SCARF1Q14162 830 aa23.08■■□□□ 1.29
CLN3-258ENST00000637184 AKAP11Q9UKA4 1901 aa23.07■■□□□ 1.28
CLN3-258ENST00000637184 GYG1P46976 350 aa23.07■■□□□ 1.28
CLN3-258ENST00000637184 VPS37DQ86XT2 251 aa23.07■■□□□ 1.28
CLN3-258ENST00000637184 SNRKQ9NRH2 765 aa23.07■■□□□ 1.28
CLN3-258ENST00000637184 GNL3LQ9NVN8 582 aaKnown RBP23.07■■□□□ 1.28
CLN3-258ENST00000637184 PODXL2Q9NZ53 605 aa23.07■■□□□ 1.28
CLN3-258ENST00000637184 KIF13BQ9NQT8 1826 aa23.07■■□□□ 1.28
CLN3-258ENST00000637184 HIP1O00291 1037 aa23.06■■□□□ 1.28
CLN3-258ENST00000637184 ATP2B4P23634 1241 aa23.06■■□□□ 1.28
CLN3-258ENST00000637184 DIAPH3Q9NSV4 1193 aa23.06■■□□□ 1.28
CLN3-258ENST00000637184 GGA1Q9UJY5 639 aa23.06■■□□□ 1.28
CLN3-258ENST00000637184 ZAP70P43403 619 aa23.06■■□□□ 1.28
CLN3-258ENST00000637184 FAM84BQ96KN1 310 aaPredicted RBP23.06■■□□□ 1.28
CLN3-258ENST00000637184 RBM19Q9Y4C8 960 aaKnown RBP23.06■■□□□ 1.28
CLN3-258ENST00000637184 UFL1O94874 794 aa23.05■■□□□ 1.28
CLN3-258ENST00000637184 PRPF40BQ6NWY9 871 aaKnown RBP23.05■■□□□ 1.28
CLN3-258ENST00000637184 KBTBD3Q8NAB2 608 aa23.05■■□□□ 1.28
CLN3-258ENST00000637184 DLEC1Q9Y238 1755 aa23.05■■□□□ 1.28
CLN3-258ENST00000637184 KLRK1P26718 216 aa23.04■■□□□ 1.28
CLN3-258ENST00000637184 PI16Q6UXB8 463 aa23.04■■□□□ 1.28
CLN3-258ENST00000637184 ESYT1Q9BSJ8 1104 aa23.04■■□□□ 1.28
CLN3-258ENST00000637184 SLX4Q8IY92 1834 aa23.04■■□□□ 1.28
CLN3-258ENST00000637184 HIBADHP31937 336 aaKnown RBP23.04■■□□□ 1.28
CLN3-258ENST00000637184 RASGRF1Q13972 1273 aa23.04■■□□□ 1.28
CLN3-258ENST00000637184 SPATA5Q8NB90 893 aa23.04■■□□□ 1.28
CLN3-258ENST00000637184 HMG20BQ9P0W2 317 aa23.04■■□□□ 1.28
CLN3-258ENST00000637184 RFX7Q2KHR2 1363 aa23.03■■□□□ 1.28
CLN3-258ENST00000637184 TTF1Q15361 905 aaPredicted RBP23.03■■□□□ 1.28
CLN3-258ENST00000637184 FBXO33Q7Z6M2 555 aa23.03■■□□□ 1.28
CLN3-258ENST00000637184 SGIP1Q9BQI5 828 aa23.03■■□□□ 1.28
CLN3-258ENST00000637184 ANTXR1Q9H6X2 564 aa23.03■■□□□ 1.28
CLN3-258ENST00000637184 IRS2Q9Y4H2 1338 aa23.02■■□□□ 1.28
CLN3-258ENST00000637184 CWC27Q6UX04 472 aaKnown RBP23.02■■□□□ 1.28
CLN3-258ENST00000637184 C15orf52Q6ZUT6 534 aaKnown RBP23.02■■□□□ 1.28
CLN3-258ENST00000637184 TICAM2Q86XR7 235 aa23.02■■□□□ 1.28
CLN3-258ENST00000637184 MPNDQ8N594 471 aa23.02■■□□□ 1.28
CLN3-258ENST00000637184 TBC1D16Q8TBP0 767 aa23.02■■□□□ 1.28
CLN3-258ENST00000637184 RUFY2Q8WXA3 655 aa23.02■■□□□ 1.28
CLN3-258ENST00000637184 LTBP1Q14766 1721 aa23.02■■□□□ 1.28
CLN3-258ENST00000637184 A0A0G2JLW4 131 aa23.01■■□□□ 1.27
CLN3-258ENST00000637184 C6orf229H3BNL8 230 aa23.01■■□□□ 1.27
CLN3-258ENST00000637184 TGFB2P61812 414 aa23.01■■□□□ 1.27
CLN3-258ENST00000637184 TXNRD3Q86VQ6 643 aa23.01■■□□□ 1.27
CLN3-258ENST00000637184 REC8O95072 547 aa23.01■■□□□ 1.27
CLN3-258ENST00000637184 CYP2E1P05181 493 aaPredicted RBP23.01■■□□□ 1.27
CLN3-258ENST00000637184 DPEP1P16444 411 aa23.01■■□□□ 1.27
CLN3-258ENST00000637184 LRRFIP1Q32MZ4 808 aaKnown RBP23.01■■□□□ 1.27
CLN3-258ENST00000637184 OLFM4Q6UX06 510 aa23.01■■□□□ 1.27
CLN3-258ENST00000637184 POLLQ9UGP5 575 aa23.01■■□□□ 1.27
CLN3-258ENST00000637184 IQSEC3Q9UPP2 1182 aaPredicted RBP23.01■■□□□ 1.27
CLN3-258ENST00000637184 SEMA3EO15041 775 aa23■■□□□ 1.27
CLN3-258ENST00000637184 FRAT2O75474 233 aaPredicted RBP23■■□□□ 1.27
CLN3-258ENST00000637184 DPP8Q6V1X1 898 aaPredicted RBP23■■□□□ 1.27
CLN3-258ENST00000637184 TTLL6Q8N841 843 aa23■■□□□ 1.27
CLN3-258ENST00000637184 PTGER2P43116 358 aa22.99■■□□□ 1.27
CLN3-258ENST00000637184 ZNF804AQ7Z570 1209 aa22.99■■□□□ 1.27
CLN3-258ENST00000637184 GPR101Q96P66 508 aaPredicted RBP22.99■■□□□ 1.27
CLN3-258ENST00000637184 DENND2AQ9ULE3 1009 aa22.99■■□□□ 1.27
CLN3-258ENST00000637184 MYH13Q9UKX3 1938 aa22.99■■□□□ 1.27
CLN3-258ENST00000637184 SGSM2O43147 1006 aa22.99■■□□□ 1.27
CLN3-258ENST00000637184 KCNA3P22001 575 aa22.99■■□□□ 1.27
CLN3-258ENST00000637184 NMIQ13287 307 aaPredicted RBP22.99■■□□□ 1.27
CLN3-258ENST00000637184 PPP1R1BQ9UD71 204 aaPredicted RBP22.99■■□□□ 1.27
CLN3-258ENST00000637184 FAM227BQ96M60 508 aa22.98■■□□□ 1.27
CLN3-258ENST00000637184 ZNF219Q9P2Y4 722 aaPredicted RBP22.98■■□□□ 1.27
CLN3-258ENST00000637184 MED23Q9ULK4 1368 aa22.97■■□□□ 1.27
CLN3-258ENST00000637184 CC2D2BQ6DHV5 1058 aa22.97■■□□□ 1.27
CLN3-258ENST00000637184 C7orf43Q8WVR3 580 aa22.97■■□□□ 1.27
CLN3-258ENST00000637184 C22orf23Q9BZE7 217 aa22.97■■□□□ 1.27
CLN3-258ENST00000637184 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.97■■□□□ 1.272e-6■■■■■ 40.7
CLN3-258ENST00000637184 MYH7P12883 1935 aa22.97■■□□□ 1.27
CLN3-258ENST00000637184 IL25Q9H293 177 aa22.96■■□□□ 1.27
CLN3-258ENST00000637184 PIH1D3Q9NQM4 214 aaKnown RBP22.96■■□□□ 1.27
CLN3-258ENST00000637184 CD2APQ9Y5K6 639 aa22.96■■□□□ 1.27
CLN3-258ENST00000637184 RAD50Q92878 1312 aa22.96■■□□□ 1.27
CLN3-258ENST00000637184 ZBTB22O15209 634 aa22.96■■□□□ 1.27
CLN3-258ENST00000637184 RNF113AO15541 343 aaKnown RBP22.96■■□□□ 1.27
CLN3-258ENST00000637184 ZFYP08048 801 aaPredicted RBP22.96■■□□□ 1.27
CLN3-258ENST00000637184 WASHC4Q2M389 1173 aa22.96■■□□□ 1.27
CLN3-258ENST00000637184 KLHL34Q8N239 644 aa22.96■■□□□ 1.27
CLN3-258ENST00000637184 TBC1D32Q96NH3 1257 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms