RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 SKIDA1Q1XH10 827 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 UBXN4Q92575 508 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 ERO1AQ96HE7 468 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 PCMTD1Q96MG8 357 aaPredicted RBP8.08□□□□□ -1.12
NEDD9-216ENST00000620854 GPHNQ9NQX3 736 aaPredicted RBP8.08□□□□□ -1.12
NEDD9-216ENST00000620854 ANO10Q9NW15 660 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 TAF5LO75529 589 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 CYP21A2P08686 494 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 TPM1P09493 284 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 SLC39A6Q13433 755 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 DHX40Q8IX18 779 aaKnown RBP8.08□□□□□ -1.12
NEDD9-216ENST00000620854 ZCRB1Q8TBF4 217 aaKnown RBP8.08□□□□□ -1.12
NEDD9-216ENST00000620854 IL17RAQ96F46 866 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 PTPDC1A2A3K4 754 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 EPB41L2O43491 1005 aaKnown RBP8.08□□□□□ -1.12
NEDD9-216ENST00000620854 MARCKSP29966 332 aaPredicted RBP8.08□□□□□ -1.12
NEDD9-216ENST00000620854 CLCN6P51797 869 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 HAND2P61296 217 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 AKAP4Q5JQC9 854 aa8.08□□□□□ -1.12
NEDD9-216ENST00000620854 MAP3K5Q99683 1374 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 ATP1A3P13637 1013 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 HNRNPH2P55795 449 aaKnown RBP8.07□□□□□ -1.12
NEDD9-216ENST00000620854 STK38Q15208 465 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 E4F1Q66K89 784 aaPredicted RBP8.07□□□□□ -1.12
NEDD9-216ENST00000620854 NYAP1Q6ZVC0 841 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 MTMR7Q9Y216 660 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 ANKRD26Q9UPS8 1709 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 NBPF6Q5VWK0 638 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 NBPF4Q96M43 638 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 UTP14AQ9BVJ6 771 aaKnown RBP8.07□□□□□ -1.12
NEDD9-216ENST00000620854 DBF4Q9UBU7 674 aaPredicted RBP8.07□□□□□ -1.12
NEDD9-216ENST00000620854 RIMS1Q86UR5 1692 aaKnown RBP8.07□□□□□ -1.12
NEDD9-216ENST00000620854 ARHGEF10O15013 1369 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 ATP5J2-PTCD1G3V325 749 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 GRM8O00222 908 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 NDUFA8P51970 172 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 BMS1Q14692 1282 aaKnown RBP8.07□□□□□ -1.12
NEDD9-216ENST00000620854 ERC1Q8IUD2 1116 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 MRFAP1L1Q96HT8 127 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 CARD6Q9BX69 1037 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 IGSF1Q8N6C5 1336 aa8.07□□□□□ -1.12
NEDD9-216ENST00000620854 RAD21O60216 631 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 CERS3Q8IU89 383 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 PPP1R13BQ96KQ4 1090 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 C8orf37Q96NL8 207 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 PCDHA7Q9UN72 937 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 HIP1O00291 1037 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 SERPINC1P01008 464 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 LRRFIP1Q32MZ4 808 aaKnown RBP8.06□□□□□ -1.12
NEDD9-216ENST00000620854 CFAP100Q494V2 611 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 EPHA10Q5JZY3 1008 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 ARMCX5Q6P1M9 558 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 TMCO3Q6UWJ1 677 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 TRIM34Q9BYJ4 488 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 NAT10Q9H0A0 1025 aaKnown RBP8.06□□□□□ -1.12
NEDD9-216ENST00000620854 IPO7O95373 1038 aaKnown RBP8.06□□□□□ -1.12
NEDD9-216ENST00000620854 IL2RBP14784 551 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 FAM160A1Q05DH4 1040 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 TFCP2Q12800 502 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 HSP90AB3PQ58FF7 597 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 TAF3Q5VWG9 929 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 KAZALD1Q96I82 304 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 DBNDD2Q9BQY9 259 aa8.06□□□□□ -1.12
NEDD9-216ENST00000620854 GOLIM4O00461 696 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 NEMFO60524 1076 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 GPS2Q13227 327 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 TEX35Q5T0J7 233 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 KSR2Q6VAB6 950 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 RBM43Q6ZSC3 357 aaKnown RBP8.05□□□□□ -1.12
NEDD9-216ENST00000620854 NBPF11Q86T75 865 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 CHMP4CQ96CF2 233 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 ZSCAN16Q9H4T2 348 aaPredicted RBP8.05□□□□□ -1.12
NEDD9-216ENST00000620854 CLIC4Q9Y696 253 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 CEP170BQ9Y4F5 1589 aaPredicted RBP8.05□□□□□ -1.12
NEDD9-216ENST00000620854 PNMA6AP0CW24 399 aaPredicted RBP8.05□□□□□ -1.12
NEDD9-216ENST00000620854 TIMM10P62072 90 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 SYCP1Q15431 976 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 STOX1Q6ZVD7 989 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 MYD88Q99836 296 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 BTG4Q9NY30 223 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 DBNLQ9UJU6 430 aaKnown RBP8.05□□□□□ -1.12
NEDD9-216ENST00000620854 ADCY9O60503 1353 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 ZNF335Q9H4Z2 1342 aaPredicted RBP8.05□□□□□ -1.12
NEDD9-216ENST00000620854 SLC3A2P08195 630 aaKnown RBP8.05□□□□□ -1.12
NEDD9-216ENST00000620854 ST5P78524 1137 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 VPS37DQ86XT2 251 aa8.05□□□□□ -1.12
NEDD9-216ENST00000620854 NSUN7Q8NE18 718 aaKnown RBP8.05□□□□□ -1.12
NEDD9-216ENST00000620854 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.05□□□□□ -1.122e-8■■□□□ 11.9
NEDD9-216ENST00000620854 ADD1P35611 737 aaKnown RBP8.04□□□□□ -1.12
NEDD9-216ENST00000620854 SF3B2Q13435 895 aaKnown RBP8.04□□□□□ -1.12
NEDD9-216ENST00000620854 UBE3BQ7Z3V4 1068 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 SNRKQ9NRH2 765 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 RCOR1Q9UKL0 485 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 USP6P35125 1406 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 TMEM131LA2VDJ0 1609 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 DHX16O60231 1041 aaKnown RBP8.04□□□□□ -1.12
NEDD9-216ENST00000620854 CTDNEP1O95476 244 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 RXRAP19793 462 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 SAFBQ15424 915 aaKnown RBP eCLIP8.04□□□□□ -1.121e-6■■■□□ 14.6
NEDD9-216ENST00000620854 RRP12Q5JTH9 1297 aaKnown RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms