RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 UBE2Q2LH0YL09 131 aa12.85□□□□□ -0.35
LIG1-209ENST00000596104 PRAMEF18Q5VWM3 479 aa12.85□□□□□ -0.35
LIG1-209ENST00000596104 KSR2Q6VAB6 950 aa12.85□□□□□ -0.35
LIG1-209ENST00000596104 PI4KAP1Q8N8J0 262 aa12.85□□□□□ -0.35
LIG1-209ENST00000596104 MXD3Q9BW11 206 aa12.85□□□□□ -0.35
LIG1-209ENST00000596104 POLR2AP24928 1970 aaKnown RBP12.84□□□□□ -0.35
LIG1-209ENST00000596104 WNT10BO00744 389 aa12.84□□□□□ -0.35
LIG1-209ENST00000596104 CCT4P50991 539 aaKnown RBP12.84□□□□□ -0.35
LIG1-209ENST00000596104 STRIP1Q5VSL9 837 aa12.84□□□□□ -0.35
LIG1-209ENST00000596104 TXNRD3Q86VQ6 643 aa12.84□□□□□ -0.35
LIG1-209ENST00000596104 CHMP4AQ9BY43 222 aa12.84□□□□□ -0.35
LIG1-209ENST00000596104 NEURL1BA8MQ27 555 aa12.83□□□□□ -0.36
LIG1-209ENST00000596104 H7C1W4 665 aa12.83□□□□□ -0.36
LIG1-209ENST00000596104 CWF19L2Q2TBE0 894 aaKnown RBP12.83□□□□□ -0.36
LIG1-209ENST00000596104 COA1Q9GZY4 146 aa12.83□□□□□ -0.36
LIG1-209ENST00000596104 MYO3BQ8WXR4 1341 aa12.83□□□□□ -0.36
LIG1-209ENST00000596104 TBC1D8O95759 1140 aa12.82□□□□□ -0.36
LIG1-209ENST00000596104 KLRK1P26718 216 aa12.82□□□□□ -0.36
LIG1-209ENST00000596104 TM4SF4P48230 202 aa12.82□□□□□ -0.36
LIG1-209ENST00000596104 OGFOD1Q8N543 542 aa12.82□□□□□ -0.36
LIG1-209ENST00000596104 ZNF296Q8WUU4 475 aaPredicted RBP12.82□□□□□ -0.36
LIG1-209ENST00000596104 HPS5Q9UPZ3 1129 aa12.82□□□□□ -0.36
LIG1-209ENST00000596104 LEMD3Q9Y2U8 911 aa12.82□□□□□ -0.36
LIG1-209ENST00000596104 PSME4Q14997 1843 aa12.82□□□□□ -0.36
LIG1-209ENST00000596104 SASH1O94885 1247 aa12.81□□□□□ -0.36
LIG1-209ENST00000596104 CASP7P55210 303 aa12.81□□□□□ -0.36
LIG1-209ENST00000596104 NEXNQ0ZGT2 675 aa12.81□□□□□ -0.36
LIG1-209ENST00000596104 PKN2Q16513 984 aaKnown RBP12.81□□□□□ -0.36
LIG1-209ENST00000596104 NOM1Q5C9Z4 860 aaKnown RBP12.81□□□□□ -0.36
LIG1-209ENST00000596104 G2E3Q7L622 706 aa12.81□□□□□ -0.36
LIG1-209ENST00000596104 UBE3BQ7Z3V4 1068 aa12.81□□□□□ -0.36
LIG1-209ENST00000596104 TSR2Q969E8 191 aaKnown RBP12.81□□□□□ -0.36
LIG1-209ENST00000596104 ZBED3Q96IU2 234 aaPredicted RBP12.81□□□□□ -0.36
LIG1-209ENST00000596104 PLA2G12BQ9BX93 195 aa12.81□□□□□ -0.36
LIG1-209ENST00000596104 TNRC18O15417 2968 aaPredicted RBP12.81□□□□□ -0.36
LIG1-209ENST00000596104 GPR25O00155 361 aa12.8□□□□□ -0.36
LIG1-209ENST00000596104 MMP14P50281 582 aa12.8□□□□□ -0.36
LIG1-209ENST00000596104 TTLL12Q14166 644 aaPredicted RBP12.8□□□□□ -0.36
LIG1-209ENST00000596104 LDLRAD1Q5T700 205 aa12.8□□□□□ -0.36
LIG1-209ENST00000596104 FBXW7Q969H0 707 aa12.8□□□□□ -0.36
LIG1-209ENST00000596104 STK31Q9BXU1 1019 aa12.8□□□□□ -0.36
LIG1-209ENST00000596104 ZNF804BA4D1E1 1349 aa12.8□□□□□ -0.36
LIG1-209ENST00000596104 CSF1RP07333 972 aa12.79□□□□□ -0.36
LIG1-209ENST00000596104 ITGA6P23229 1130 aa12.79□□□□□ -0.36
LIG1-209ENST00000596104 NF2P35240 595 aa12.79□□□□□ -0.36
LIG1-209ENST00000596104 IGHMBP2P38935 993 aaKnown RBP12.79□□□□□ -0.36
LIG1-209ENST00000596104 PTPN12Q05209 780 aaKnown RBP12.79□□□□□ -0.36
LIG1-209ENST00000596104 GCKRQ14397 625 aa12.79□□□□□ -0.36
LIG1-209ENST00000596104 TTLL5Q6EMB2 1281 aa12.79□□□□□ -0.36
LIG1-209ENST00000596104 APOBEC3FQ8IUX4 373 aaKnown RBP12.79□□□□□ -0.36
LIG1-209ENST00000596104 KIAA0825Q8IV33 1275 aa12.79□□□□□ -0.36
LIG1-209ENST00000596104 CFHR5Q9BXR6 569 aa12.79□□□□□ -0.36
LIG1-209ENST00000596104 ANKRD2Q9GZV1 360 aa12.79□□□□□ -0.36
LIG1-209ENST00000596104 HDAC9Q9UKV0 1011 aa12.79□□□□□ -0.36
LIG1-209ENST00000596104 PDE4DIPQ5VU43 2346 aa12.79□□□□□ -0.36
LIG1-209ENST00000596104 ZNF646O15015 1829 aaPredicted RBP12.78□□□□□ -0.36
LIG1-209ENST00000596104 SLC4A2P04920 1241 aa12.78□□□□□ -0.36
LIG1-209ENST00000596104 GTF2IP78347 998 aa12.78□□□□□ -0.36
LIG1-209ENST00000596104 MKRN3Q13064 507 aaKnown RBP12.78□□□□□ -0.36
LIG1-209ENST00000596104 CCDC27Q2M243 656 aa12.78□□□□□ -0.36
LIG1-209ENST00000596104 TWISTNBQ3B726 338 aaPredicted RBP12.78□□□□□ -0.36
LIG1-209ENST00000596104 ARMC9Q7Z3E5 817 aa12.78□□□□□ -0.36
LIG1-209ENST00000596104 R3HDMLQ9H3Y0 253 aa12.78□□□□□ -0.36
LIG1-209ENST00000596104 PCDH10Q9P2E7 1040 aa12.78□□□□□ -0.36
LIG1-209ENST00000596104 IRS2Q9Y4H2 1338 aa12.78□□□□□ -0.36
LIG1-209ENST00000596104 CHRNDQ07001 517 aa12.77□□□□□ -0.37
LIG1-209ENST00000596104 SREBF2Q12772 1141 aa12.77□□□□□ -0.37
LIG1-209ENST00000596104 FLIIQ13045 1269 aa12.77□□□□□ -0.37
LIG1-209ENST00000596104 PRKG1Q13976 671 aa12.77□□□□□ -0.37
LIG1-209ENST00000596104 PRPF38BQ5VTL8 546 aaKnown RBP12.77□□□□□ -0.37
LIG1-209ENST00000596104 SPRYD7Q5W111 196 aa12.77□□□□□ -0.37
LIG1-209ENST00000596104 FBXO46Q6PJ61 603 aaPredicted RBP12.77□□□□□ -0.37
LIG1-209ENST00000596104 WWC1Q8IX03 1113 aa12.77□□□□□ -0.37
LIG1-209ENST00000596104 CERS5Q8N5B7 392 aa12.77□□□□□ -0.37
LIG1-209ENST00000596104 MPHOSPH8Q99549 860 aa12.77□□□□□ -0.37
LIG1-209ENST00000596104 CD209Q9NNX6 404 aa12.77□□□□□ -0.37
LIG1-209ENST00000596104 AKAP11Q9UKA4 1901 aa12.77□□□□□ -0.37
LIG1-209ENST00000596104 SNAP23O00161 211 aa12.76□□□□□ -0.37
LIG1-209ENST00000596104 CCDC184Q52MB2 194 aa12.76□□□□□ -0.37
LIG1-209ENST00000596104 C15orf52Q6ZUT6 534 aaKnown RBP12.76□□□□□ -0.37
LIG1-209ENST00000596104 LINS1Q8NG48 757 aa12.76□□□□□ -0.37
LIG1-209ENST00000596104 DNAAF4Q8WXU2 420 aa12.76□□□□□ -0.37
LIG1-209ENST00000596104 DEFB129Q9H1M3 183 aa12.76□□□□□ -0.37
LIG1-209ENST00000596104 ANGEL1Q9UNK9 670 aaKnown RBP12.76□□□□□ -0.37
LIG1-209ENST00000596104 FZD1Q9UP38 647 aa12.76□□□□□ -0.37
LIG1-209ENST00000596104 SSC5DA1L4H1 1573 aa12.75□□□□□ -0.37
LIG1-209ENST00000596104 FKTNO75072 461 aa12.75□□□□□ -0.37
LIG1-209ENST00000596104 COL1A1P02452 1464 aaPredicted RBP12.75□□□□□ -0.37
LIG1-209ENST00000596104 IL16Q14005 1332 aa12.75□□□□□ -0.37
LIG1-209ENST00000596104 MAP3K11Q16584 847 aa12.75□□□□□ -0.37
LIG1-209ENST00000596104 MTMR14Q8NCE2 650 aa12.75□□□□□ -0.37
LIG1-209ENST00000596104 MYH16Q9H6N6 1097 aa12.75□□□□□ -0.37
LIG1-209ENST00000596104 PCDHAC2Q9Y5I4 1007 aa12.75□□□□□ -0.37
LIG1-209ENST00000596104 KCNJ4P48050 445 aa12.74□□□□□ -0.37
LIG1-209ENST00000596104 FKBP5Q13451 457 aaPredicted RBP12.74□□□□□ -0.37
LIG1-209ENST00000596104 DLGAP5Q15398 846 aa12.74□□□□□ -0.37
LIG1-209ENST00000596104 AOX1Q06278 1338 aa12.73□□□□□ -0.37
LIG1-209ENST00000596104 ANKRD18BA2A2Z9 1011 aa12.73□□□□□ -0.37
LIG1-209ENST00000596104 MANSC4A6NHS7 340 aaPredicted RBP12.73□□□□□ -0.37
LIG1-209ENST00000596104 TAF5LO75529 589 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms