RNA–Protein interactions for RNA: ENST00000595993.5

USHBP1-205, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-205ENST00000595993 MED23Q9ULK4 1368 aa20.35■□□□□ 0.85
USHBP1-205ENST00000595993 ATP2B4P23634 1241 aa20.35■□□□□ 0.85
USHBP1-205ENST00000595993 CTSWP56202 376 aa20.35■□□□□ 0.85
USHBP1-205ENST00000595993 HNRNPUQ00839 825 aaKnown RBP eCLIP20.35■□□□□ 0.85
USHBP1-205ENST00000595993 SCARF1Q14162 830 aa20.35■□□□□ 0.85
USHBP1-205ENST00000595993 G2E3Q7L622 706 aa20.35■□□□□ 0.85
USHBP1-205ENST00000595993 TRMT2AQ8IZ69 625 aaKnown RBP20.35■□□□□ 0.85
USHBP1-205ENST00000595993 STK31Q9BXU1 1019 aa20.35■□□□□ 0.85
USHBP1-205ENST00000595993 SPEF2Q9C093 1822 aa20.34■□□□□ 0.85
USHBP1-205ENST00000595993 G3V3G9 751 aa20.34■□□□□ 0.85
USHBP1-205ENST00000595993 SLC34A2O95436 690 aa20.34■□□□□ 0.85
USHBP1-205ENST00000595993 FKBP1BP68106 108 aa20.34■□□□□ 0.85
USHBP1-205ENST00000595993 DCAF8Q5TAQ9 597 aa20.34■□□□□ 0.85
USHBP1-205ENST00000595993 ANGEL2Q5VTE6 544 aaKnown RBP20.34■□□□□ 0.85
USHBP1-205ENST00000595993 KSR2Q6VAB6 950 aa20.34■□□□□ 0.85
USHBP1-205ENST00000595993 TTLL11Q8NHH1 800 aa20.34■□□□□ 0.85
USHBP1-205ENST00000595993 CCDC85AQ96PX6 553 aaPredicted RBP20.34■□□□□ 0.85
USHBP1-205ENST00000595993 MYOZ2Q9NPC6 264 aa20.34■□□□□ 0.85
USHBP1-205ENST00000595993 RNF186Q9NXI6 227 aa20.34■□□□□ 0.85
USHBP1-205ENST00000595993 MAP3K2Q9Y2U5 619 aa20.34■□□□□ 0.85
USHBP1-205ENST00000595993 USP17L3A6NCW0 530 aa20.33■□□□□ 0.85
USHBP1-205ENST00000595993 USP17L4A6NCW7 530 aa20.33■□□□□ 0.85
USHBP1-205ENST00000595993 SLC4A2P04920 1241 aa20.33■□□□□ 0.85
USHBP1-205ENST00000595993 USP17L8P0C7I0 530 aa20.33■□□□□ 0.85
USHBP1-205ENST00000595993 USP17L1Q7RTZ2 530 aa20.33■□□□□ 0.85
USHBP1-205ENST00000595993 REM2Q8IYK8 340 aaPredicted RBP20.33■□□□□ 0.85
USHBP1-205ENST00000595993 CSRNP1Q96S65 589 aa20.33■□□□□ 0.85
USHBP1-205ENST00000595993 CDC5LQ99459 802 aaKnown RBP20.33■□□□□ 0.85
USHBP1-205ENST00000595993 BSDC1Q9NW68 430 aaPredicted RBP20.33■□□□□ 0.85
USHBP1-205ENST00000595993 PI4KAP2A4QPH2 592 aa20.32■□□□□ 0.84
USHBP1-205ENST00000595993 WTIPA6NIX2 430 aaPredicted RBP20.32■□□□□ 0.84
USHBP1-205ENST00000595993 RASAL3Q86YV0 1011 aa20.32■□□□□ 0.84
USHBP1-205ENST00000595993 PI4KAP1Q8N8J0 262 aa20.32■□□□□ 0.84
USHBP1-205ENST00000595993 MINPP1Q9UNW1 487 aa20.32■□□□□ 0.84
USHBP1-205ENST00000595993 DACT2Q5SW24 774 aa20.31■□□□□ 0.84
USHBP1-205ENST00000595993 GREM2Q9H772 168 aa20.31■□□□□ 0.84
USHBP1-205ENST00000595993 TRPA1O75762 1119 aa20.3■□□□□ 0.84
USHBP1-205ENST00000595993 NEURL1BA8MQ27 555 aa20.29■□□□□ 0.84
USHBP1-205ENST00000595993 H7C1W4 665 aa20.29■□□□□ 0.84
USHBP1-205ENST00000595993 FLIIQ13045 1269 aa20.29■□□□□ 0.84
USHBP1-205ENST00000595993 CCT4P50991 539 aaKnown RBP20.28■□□□□ 0.84
USHBP1-205ENST00000595993 CWF19L2Q2TBE0 894 aaKnown RBP20.28■□□□□ 0.84
USHBP1-205ENST00000595993 MYO3BQ8WXR4 1341 aa20.27■□□□□ 0.84
USHBP1-205ENST00000595993 MMP14P50281 582 aa20.27■□□□□ 0.84
USHBP1-205ENST00000595993 NEXNQ0ZGT2 675 aa20.27■□□□□ 0.84
USHBP1-205ENST00000595993 NBPF9Q3BBW0 867 aa20.27■□□□□ 0.84
USHBP1-205ENST00000595993 STRIP1Q5VSL9 837 aa20.27■□□□□ 0.84
USHBP1-205ENST00000595993 PLA2G12BQ9BX93 195 aa20.27■□□□□ 0.84
USHBP1-205ENST00000595993 COA1Q9GZY4 146 aa20.27■□□□□ 0.84
USHBP1-205ENST00000595993 CASP7P55210 303 aa20.26■□□□□ 0.83
USHBP1-205ENST00000595993 TXNRD3Q86VQ6 643 aa20.26■□□□□ 0.83
USHBP1-205ENST00000595993 LEMD3Q9Y2U8 911 aa20.26■□□□□ 0.83
USHBP1-205ENST00000595993 WNT10BO00744 389 aa20.25■□□□□ 0.83
USHBP1-205ENST00000595993 MXD3Q9BW11 206 aa20.25■□□□□ 0.83
USHBP1-205ENST00000595993 ZBED9Q6R2W3 1325 aa20.25■□□□□ 0.83
USHBP1-205ENST00000595993 A0A1B0GUL6 1792 aa20.24■□□□□ 0.83
USHBP1-205ENST00000595993 CSF1RP07333 972 aa20.24■□□□□ 0.83
USHBP1-205ENST00000595993 FKBP5Q13451 457 aaPredicted RBP20.24■□□□□ 0.83
USHBP1-205ENST00000595993 MOB2Q70IA6 237 aa20.24■□□□□ 0.83
USHBP1-205ENST00000595993 UBE3BQ7Z3V4 1068 aa20.24■□□□□ 0.83
USHBP1-205ENST00000595993 GCKRQ14397 625 aa20.23■□□□□ 0.83
USHBP1-205ENST00000595993 CTU1Q7Z7A3 348 aaKnown RBP20.23■□□□□ 0.83
USHBP1-205ENST00000595993 OGFOD1Q8N543 542 aa20.23■□□□□ 0.83
USHBP1-205ENST00000595993 MRPL50Q8N5N7 158 aaKnown RBP20.23■□□□□ 0.83
USHBP1-205ENST00000595993 SSH1Q8WYL5 1049 aa20.23■□□□□ 0.83
USHBP1-205ENST00000595993 ZBED3Q96IU2 234 aaPredicted RBP20.23■□□□□ 0.83
USHBP1-205ENST00000595993 SCAF8Q9UPN6 1271 aaKnown RBP20.23■□□□□ 0.83
USHBP1-205ENST00000595993 IRS2Q9Y4H2 1338 aa20.23■□□□□ 0.83
USHBP1-205ENST00000595993 LAMB1P07942 1786 aa20.22■□□□□ 0.83
USHBP1-205ENST00000595993 UBE2Q2LH0YL09 131 aa20.22■□□□□ 0.83
USHBP1-205ENST00000595993 NOM1Q5C9Z4 860 aaKnown RBP20.22■□□□□ 0.83
USHBP1-205ENST00000595993 ANKRD2Q9GZV1 360 aa20.22■□□□□ 0.83
USHBP1-205ENST00000595993 ZNF804BA4D1E1 1349 aa20.22■□□□□ 0.83
USHBP1-205ENST00000595993 ITGA6P23229 1130 aa20.21■□□□□ 0.83
USHBP1-205ENST00000595993 KLRK1P26718 216 aa20.21■□□□□ 0.83
USHBP1-205ENST00000595993 IGHMBP2P38935 993 aaKnown RBP20.21■□□□□ 0.83
USHBP1-205ENST00000595993 TM4SF4P48230 202 aa20.21■□□□□ 0.83
USHBP1-205ENST00000595993 PRAMEF18Q5VWM3 479 aa20.21■□□□□ 0.83
USHBP1-205ENST00000595993 COL1A1P02452 1464 aaPredicted RBP20.2■□□□□ 0.82
USHBP1-205ENST00000595993 F6X3S4 739 aa20.2■□□□□ 0.82
USHBP1-205ENST00000595993 DNAAF4Q8WXU2 420 aa20.2■□□□□ 0.82
USHBP1-205ENST00000595993 CFHR5Q9BXR6 569 aa20.2■□□□□ 0.82
USHBP1-205ENST00000595993 PDE4DIPQ5VU43 2346 aa20.19■□□□□ 0.82
USHBP1-205ENST00000595993 ECM29Q5VYK3 1845 aa20.19■□□□□ 0.82
USHBP1-205ENST00000595993 TTLL5Q6EMB2 1281 aa20.19■□□□□ 0.82
USHBP1-205ENST00000595993 C15orf52Q6ZUT6 534 aaKnown RBP20.19■□□□□ 0.82
USHBP1-205ENST00000595993 LINS1Q8NG48 757 aa20.19■□□□□ 0.82
USHBP1-205ENST00000595993 SASH1O94885 1247 aa20.18■□□□□ 0.82
USHBP1-205ENST00000595993 CT47B1P0C2W7 299 aaPredicted RBP20.18■□□□□ 0.82
USHBP1-205ENST00000595993 ALDH1L2Q3SY69 923 aa20.18■□□□□ 0.82
USHBP1-205ENST00000595993 LDLRAD1Q5T700 205 aa20.18■□□□□ 0.82
USHBP1-205ENST00000595993 APOBEC3FQ8IUX4 373 aaKnown RBP20.18■□□□□ 0.82
USHBP1-205ENST00000595993 HTTP42858 3142 aa20.17■□□□□ 0.82
USHBP1-205ENST00000595993 NF2P35240 595 aa20.17■□□□□ 0.82
USHBP1-205ENST00000595993 CHRNDQ07001 517 aa20.17■□□□□ 0.82
USHBP1-205ENST00000595993 PKN2Q16513 984 aaKnown RBP20.17■□□□□ 0.82
USHBP1-205ENST00000595993 ZNF296Q8WUU4 475 aaPredicted RBP20.17■□□□□ 0.82
USHBP1-205ENST00000595993 SMC4Q9NTJ3 1288 aa20.17■□□□□ 0.82
USHBP1-205ENST00000595993 SOX10P56693 466 aa20.16■□□□□ 0.82
USHBP1-205ENST00000595993 KIAA0825Q8IV33 1275 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms