RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PDE3AQ14432 1141 aa18.71■□□□□ 0.59
UPF1-202ENST00000594243 TXNRD3Q86VQ6 643 aa18.71■□□□□ 0.59
UPF1-202ENST00000594243 COPRSQ9NQ92 184 aa18.71■□□□□ 0.59
UPF1-202ENST00000594243 KCNQ5Q9NR82 932 aa18.71■□□□□ 0.59
UPF1-202ENST00000594243 SCN4AP35499 1836 aa18.7■□□□□ 0.58
UPF1-202ENST00000594243 VIL1P09327 827 aaKnown RBP18.7■□□□□ 0.58
UPF1-202ENST00000594243 RPS12P25398 132 aaKnown RBP18.7■□□□□ 0.58
UPF1-202ENST00000594243 GMPSP49915 693 aaPredicted RBP18.7■□□□□ 0.58
UPF1-202ENST00000594243 MVPQ14764 893 aaKnown RBP18.7■□□□□ 0.58
UPF1-202ENST00000594243 DPF2Q92785 391 aa18.7■□□□□ 0.58
UPF1-202ENST00000594243 GPRC5DQ9NZD1 345 aa18.7■□□□□ 0.58
UPF1-202ENST00000594243 DDX19BQ9UMR2 479 aa18.7■□□□□ 0.58
UPF1-202ENST00000594243 USP17L3A6NCW0 530 aa18.69■□□□□ 0.58
UPF1-202ENST00000594243 USP17L4A6NCW7 530 aa18.69■□□□□ 0.58
UPF1-202ENST00000594243 KLRK1P26718 216 aa18.69■□□□□ 0.58
UPF1-202ENST00000594243 IL15P40933 162 aaPredicted RBP18.69■□□□□ 0.58
UPF1-202ENST00000594243 FSTL1Q12841 308 aa18.69■□□□□ 0.58
UPF1-202ENST00000594243 USP17L1Q7RTZ2 530 aa18.69■□□□□ 0.58
UPF1-202ENST00000594243 ZNF804AQ7Z570 1209 aa18.69■□□□□ 0.58
UPF1-202ENST00000594243 SMC1BQ8NDV3 1235 aa18.69■□□□□ 0.58
UPF1-202ENST00000594243 SIL1Q9H173 461 aa18.69■□□□□ 0.58
UPF1-202ENST00000594243 EPS15P42566 896 aa18.68■□□□□ 0.58
UPF1-202ENST00000594243 ATP8B2P98198 1209 aa18.68■□□□□ 0.58
UPF1-202ENST00000594243 USP50Q70EL3 339 aaPredicted RBP18.68■□□□□ 0.58
UPF1-202ENST00000594243 ATG9AQ7Z3C6 839 aa18.68■□□□□ 0.58
UPF1-202ENST00000594243 VGLL2Q8N8G2 317 aa18.68■□□□□ 0.58
UPF1-202ENST00000594243 CD209Q9NNX6 404 aa18.68■□□□□ 0.58
UPF1-202ENST00000594243 CEP126Q9P2H0 1117 aa18.68■□□□□ 0.58
UPF1-202ENST00000594243 CNOT7Q9UIV1 285 aaKnown RBP18.68■□□□□ 0.58
UPF1-202ENST00000594243 COG6Q9Y2V7 657 aa18.68■□□□□ 0.58
UPF1-202ENST00000594243 ZBTB12Q9Y330 459 aaPredicted RBP18.68■□□□□ 0.58
UPF1-202ENST00000594243 IRS2Q9Y4H2 1338 aa18.68■□□□□ 0.58
UPF1-202ENST00000594243 H7C1D1 291 aa18.67■□□□□ 0.58
UPF1-202ENST00000594243 EAPPQ56P03 285 aaPredicted RBP18.67■□□□□ 0.58
UPF1-202ENST00000594243 STRIP1Q5VSL9 837 aa18.67■□□□□ 0.58
UPF1-202ENST00000594243 RSBN1LQ6PCB5 846 aaPredicted RBP18.67■□□□□ 0.58
UPF1-202ENST00000594243 AGBL3Q8NEM8 1001 aa18.67■□□□□ 0.58
UPF1-202ENST00000594243 ADARB2Q9NS39 739 aaKnown RBP18.67■□□□□ 0.58
UPF1-202ENST00000594243 PA2G4Q9UQ80 394 aaKnown RBP18.67■□□□□ 0.58
UPF1-202ENST00000594243 PNMA6EA0A0J9YXQ4 647 aa18.66■□□□□ 0.58
UPF1-202ENST00000594243 IFIT1P09914 478 aaKnown RBP18.66■□□□□ 0.58
UPF1-202ENST00000594243 PUM3Q15397 648 aaKnown RBP18.66■□□□□ 0.58
UPF1-202ENST00000594243 CAVIN4Q5BKX8 364 aa18.66■□□□□ 0.58
UPF1-202ENST00000594243 TTLL5Q6EMB2 1281 aa18.66■□□□□ 0.58
UPF1-202ENST00000594243 LDHDQ86WU2 507 aa18.66■□□□□ 0.58
UPF1-202ENST00000594243 CLEC11AQ9Y240 323 aa18.66■□□□□ 0.58
UPF1-202ENST00000594243 IL1R1P14778 569 aa18.65■□□□□ 0.58
UPF1-202ENST00000594243 HIBADHP31937 336 aaKnown RBP18.65■□□□□ 0.58
UPF1-202ENST00000594243 CHADLQ6NUI6 762 aa18.65■□□□□ 0.58
UPF1-202ENST00000594243 VPS37DQ86XT2 251 aa18.65■□□□□ 0.58
UPF1-202ENST00000594243 LPIN2Q92539 896 aa18.65■□□□□ 0.58
UPF1-202ENST00000594243 FBXW7Q969H0 707 aa18.65■□□□□ 0.58
UPF1-202ENST00000594243 FAM84BQ96KN1 310 aaPredicted RBP18.65■□□□□ 0.58
UPF1-202ENST00000594243 C1orf115Q9H7X2 142 aa18.65■□□□□ 0.58
UPF1-202ENST00000594243 A0A1B0GUL6 1792 aa18.65■□□□□ 0.58
UPF1-202ENST00000594243 FGFR2P21802 821 aa18.64■□□□□ 0.57
UPF1-202ENST00000594243 G3BP1Q13283 466 aaKnown RBP eCLIP18.64■□□□□ 0.57
UPF1-202ENST00000594243 POLA2Q14181 598 aa18.64■□□□□ 0.57
UPF1-202ENST00000594243 MICALL2Q8IY33 904 aa18.64■□□□□ 0.57
UPF1-202ENST00000594243 SSH3Q8TE77 659 aa18.64■□□□□ 0.57
UPF1-202ENST00000594243 MYO3BQ8WXR4 1341 aa18.64■□□□□ 0.57
UPF1-202ENST00000594243 SASH1O94885 1247 aa18.63■□□□□ 0.57
UPF1-202ENST00000594243 POTEIP0CG38 1075 aa18.63■□□□□ 0.57
UPF1-202ENST00000594243 POTEJP0CG39 1038 aa18.63■□□□□ 0.57
UPF1-202ENST00000594243 SLC5A1P13866 664 aa18.63■□□□□ 0.57
UPF1-202ENST00000594243 GYG1P46976 350 aa18.63■□□□□ 0.57
UPF1-202ENST00000594243 GTF2IP78347 998 aa18.63■□□□□ 0.57
UPF1-202ENST00000594243 DACT2Q5SW24 774 aa18.63■□□□□ 0.57
UPF1-202ENST00000594243 C20orf194Q5TEA3 1177 aa18.63■□□□□ 0.57
UPF1-202ENST00000594243 ZBTB40Q9NUA8 1239 aa18.63■□□□□ 0.57
UPF1-202ENST00000594243 HSPA6P17066 643 aa18.62■□□□□ 0.57
UPF1-202ENST00000594243 MMP14P50281 582 aa18.62■□□□□ 0.57
UPF1-202ENST00000594243 FBXO33Q7Z6M2 555 aa18.62■□□□□ 0.57
UPF1-202ENST00000594243 TDRD7Q8NHU6 1098 aaKnown RBP18.62■□□□□ 0.57
UPF1-202ENST00000594243 AKAP2Q9Y2D5 859 aa18.62■□□□□ 0.57
UPF1-202ENST00000594243 ZNF609O15014 1411 aa18.62■□□□□ 0.57
UPF1-202ENST00000594243 USP17L8P0C7I0 530 aa18.61■□□□□ 0.57
UPF1-202ENST00000594243 RRP1P56182 461 aaKnown RBP18.61■□□□□ 0.57
UPF1-202ENST00000594243 ATP2B3Q16720 1220 aa18.61■□□□□ 0.57
UPF1-202ENST00000594243 CEP85Q6P2H3 762 aa18.61■□□□□ 0.57
UPF1-202ENST00000594243 RPAP2Q8IXW5 612 aaPredicted RBP18.61■□□□□ 0.57
UPF1-202ENST00000594243 OGFOD1Q8N543 542 aa18.61■□□□□ 0.57
UPF1-202ENST00000594243 GMLQ99445 158 aa18.61■□□□□ 0.57
UPF1-202ENST00000594243 FRAT2O75474 233 aaPredicted RBP18.6■□□□□ 0.57
UPF1-202ENST00000594243 SURF6O75683 361 aaKnown RBP18.6■□□□□ 0.57
UPF1-202ENST00000594243 FKBP1AP62942 108 aaKnown RBP18.6■□□□□ 0.57
UPF1-202ENST00000594243 ZC3H15Q8WU90 426 aaKnown RBP18.6■□□□□ 0.57
UPF1-202ENST00000594243 SCN9AQ15858 1988 aa18.6■□□□□ 0.57
UPF1-202ENST00000594243 BCAMP50895 628 aa18.59■□□□□ 0.57
UPF1-202ENST00000594243 ZNF280AP59817 542 aaPredicted RBP18.59■□□□□ 0.57
UPF1-202ENST00000594243 TFCP2Q12800 502 aa18.59■□□□□ 0.57
UPF1-202ENST00000594243 SAMD7Q7Z3H4 446 aa18.59■□□□□ 0.57
UPF1-202ENST00000594243 PSME4Q14997 1843 aa18.58■□□□□ 0.57
UPF1-202ENST00000594243 FAM205AQ6ZU69 1335 aa18.58■□□□□ 0.57
UPF1-202ENST00000594243 SHTN1A0MZ66 631 aa18.58■□□□□ 0.56
UPF1-202ENST00000594243 HIRAP54198 1017 aaPredicted RBP18.58■□□□□ 0.56
UPF1-202ENST00000594243 OS9Q13438 667 aaPredicted RBP18.58■□□□□ 0.56
UPF1-202ENST00000594243 TBC1D10BQ4KMP7 808 aaPredicted RBP18.58■□□□□ 0.56
UPF1-202ENST00000594243 RBM26Q5T8P6 1007 aaKnown RBP18.58■□□□□ 0.56
UPF1-202ENST00000594243 CNTROBQ8N137 903 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms