RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 IRS2Q9Y4H2 1338 aa14.83□□□□□ -0.04
LIG3-213ENST00000590630 ZNF609O15014 1411 aa14.83□□□□□ -0.04
LIG3-213ENST00000590630 PSMD14O00487 310 aa14.82□□□□□ -0.04
LIG3-213ENST00000590630 PDE8BO95263 885 aa14.82□□□□□ -0.04
LIG3-213ENST00000590630 RPS12P25398 132 aaKnown RBP14.82□□□□□ -0.04
LIG3-213ENST00000590630 KLRK1P26718 216 aa14.82□□□□□ -0.04
LIG3-213ENST00000590630 EPHX2P34913 555 aa14.82□□□□□ -0.04
LIG3-213ENST00000590630 GMPSP49915 693 aaPredicted RBP14.82□□□□□ -0.04
LIG3-213ENST00000590630 PDE3AQ14432 1141 aa14.82□□□□□ -0.04
LIG3-213ENST00000590630 MVPQ14764 893 aaKnown RBP14.82□□□□□ -0.04
LIG3-213ENST00000590630 PNMA8AQ86V59 439 aaPredicted RBP14.82□□□□□ -0.04
LIG3-213ENST00000590630 VGLL2Q8N8G2 317 aa14.82□□□□□ -0.04
LIG3-213ENST00000590630 COPRSQ9NQ92 184 aa14.82□□□□□ -0.04
LIG3-213ENST00000590630 GPRC5DQ9NZD1 345 aa14.82□□□□□ -0.04
LIG3-213ENST00000590630 ADAMTSL1Q8N6G6 1762 aa14.82□□□□□ -0.04
LIG3-213ENST00000590630 SNAP23O00161 211 aa14.81□□□□□ -0.04
LIG3-213ENST00000590630 VIL1P09327 827 aaKnown RBP14.81□□□□□ -0.04
LIG3-213ENST00000590630 FSTL1Q12841 308 aa14.81□□□□□ -0.04
LIG3-213ENST00000590630 ZNF804AQ7Z570 1209 aa14.81□□□□□ -0.04
LIG3-213ENST00000590630 SMC1BQ8NDV3 1235 aa14.81□□□□□ -0.04
LIG3-213ENST00000590630 DPF2Q92785 391 aa14.81□□□□□ -0.04
LIG3-213ENST00000590630 KCNQ5Q9NR82 932 aa14.81□□□□□ -0.04
LIG3-213ENST00000590630 DDX19BQ9UMR2 479 aa14.81□□□□□ -0.04
LIG3-213ENST00000590630 USP17L3A6NCW0 530 aa14.8□□□□□ -0.04
LIG3-213ENST00000590630 USP17L4A6NCW7 530 aa14.8□□□□□ -0.04
LIG3-213ENST00000590630 IL15P40933 162 aaPredicted RBP14.8□□□□□ -0.04
LIG3-213ENST00000590630 EPS15P42566 896 aa14.8□□□□□ -0.04
LIG3-213ENST00000590630 PUM3Q15397 648 aaKnown RBP14.8□□□□□ -0.04
LIG3-213ENST00000590630 USP17L1Q7RTZ2 530 aa14.8□□□□□ -0.04
LIG3-213ENST00000590630 ATG9AQ7Z3C6 839 aa14.8□□□□□ -0.04
LIG3-213ENST00000590630 SIL1Q9H173 461 aa14.8□□□□□ -0.04
LIG3-213ENST00000590630 CHMP4BQ9H444 224 aaKnown RBP14.8□□□□□ -0.04
LIG3-213ENST00000590630 STRIP1Q5VSL9 837 aa14.79□□□□□ -0.04
LIG3-213ENST00000590630 USP50Q70EL3 339 aaPredicted RBP14.79□□□□□ -0.04
LIG3-213ENST00000590630 LDHDQ86WU2 507 aa14.79□□□□□ -0.04
LIG3-213ENST00000590630 AGBL3Q8NEM8 1001 aa14.79□□□□□ -0.04
LIG3-213ENST00000590630 CD209Q9NNX6 404 aa14.79□□□□□ -0.04
LIG3-213ENST00000590630 ADARB2Q9NS39 739 aaKnown RBP14.79□□□□□ -0.04
LIG3-213ENST00000590630 MYH13Q9UKX3 1938 aa14.79□□□□□ -0.04
LIG3-213ENST00000590630 PA2G4Q9UQ80 394 aaKnown RBP14.79□□□□□ -0.04
LIG3-213ENST00000590630 COG6Q9Y2V7 657 aa14.79□□□□□ -0.04
LIG3-213ENST00000590630 ZBTB12Q9Y330 459 aaPredicted RBP14.79□□□□□ -0.04
LIG3-213ENST00000590630 ARAP2Q8WZ64 1704 aa14.78□□□□□ -0.04
LIG3-213ENST00000590630 MYO3BQ8WXR4 1341 aa14.78□□□□□ -0.04
LIG3-213ENST00000590630 PNMA6EA0A0J9YXQ4 647 aa14.78□□□□□ -0.04
LIG3-213ENST00000590630 H7C1D1 291 aa14.78□□□□□ -0.04
LIG3-213ENST00000590630 IL1R1P14778 569 aa14.78□□□□□ -0.04
LIG3-213ENST00000590630 EAPPQ56P03 285 aaPredicted RBP14.78□□□□□ -0.04
LIG3-213ENST00000590630 RSBN1LQ6PCB5 846 aaPredicted RBP14.78□□□□□ -0.04
LIG3-213ENST00000590630 C1orf115Q9H7X2 142 aa14.78□□□□□ -0.04
LIG3-213ENST00000590630 CEP126Q9P2H0 1117 aa14.78□□□□□ -0.04
LIG3-213ENST00000590630 CNOT7Q9UIV1 285 aaKnown RBP14.78□□□□□ -0.04
LIG3-213ENST00000590630 IFIT1P09914 478 aaKnown RBP14.77□□□□□ -0.05
LIG3-213ENST00000590630 FGFR2P21802 821 aa14.77□□□□□ -0.05
LIG3-213ENST00000590630 ATP8B2P98198 1209 aa14.77□□□□□ -0.05
LIG3-213ENST00000590630 POLA2Q14181 598 aa14.77□□□□□ -0.05
LIG3-213ENST00000590630 CAVIN4Q5BKX8 364 aa14.77□□□□□ -0.05
LIG3-213ENST00000590630 DACT2Q5SW24 774 aa14.77□□□□□ -0.05
LIG3-213ENST00000590630 TTLL5Q6EMB2 1281 aa14.77□□□□□ -0.05
LIG3-213ENST00000590630 CHADLQ6NUI6 762 aa14.77□□□□□ -0.05
LIG3-213ENST00000590630 MICALL2Q8IY33 904 aa14.77□□□□□ -0.05
LIG3-213ENST00000590630 SSH3Q8TE77 659 aa14.77□□□□□ -0.05
LIG3-213ENST00000590630 LPIN2Q92539 896 aa14.77□□□□□ -0.05
LIG3-213ENST00000590630 POTEIP0CG38 1075 aa14.76□□□□□ -0.05
LIG3-213ENST00000590630 POTEJP0CG39 1038 aa14.76□□□□□ -0.05
LIG3-213ENST00000590630 SLC5A1P13866 664 aa14.76□□□□□ -0.05
LIG3-213ENST00000590630 HIBADHP31937 336 aaKnown RBP14.76□□□□□ -0.05
LIG3-213ENST00000590630 GYG1P46976 350 aa14.76□□□□□ -0.05
LIG3-213ENST00000590630 C20orf194Q5TEA3 1177 aa14.76□□□□□ -0.05
LIG3-213ENST00000590630 VPS37DQ86XT2 251 aa14.76□□□□□ -0.05
LIG3-213ENST00000590630 FAM84BQ96KN1 310 aaPredicted RBP14.76□□□□□ -0.05
LIG3-213ENST00000590630 GMLQ99445 158 aa14.76□□□□□ -0.05
LIG3-213ENST00000590630 ZBTB40Q9NUA8 1239 aa14.76□□□□□ -0.05
LIG3-213ENST00000590630 SASH1O94885 1247 aa14.75□□□□□ -0.05
LIG3-213ENST00000590630 MMP14P50281 582 aa14.75□□□□□ -0.05
LIG3-213ENST00000590630 GTF2IP78347 998 aa14.75□□□□□ -0.05
LIG3-213ENST00000590630 ATP2B3Q16720 1220 aa14.75□□□□□ -0.05
LIG3-213ENST00000590630 CEP85Q6P2H3 762 aa14.75□□□□□ -0.05
LIG3-213ENST00000590630 FBXO33Q7Z6M2 555 aa14.75□□□□□ -0.05
LIG3-213ENST00000590630 FBXW7Q969H0 707 aa14.75□□□□□ -0.05
LIG3-213ENST00000590630 CLEC11AQ9Y240 323 aa14.75□□□□□ -0.05
LIG3-213ENST00000590630 USP17L8P0C7I0 530 aa14.74□□□□□ -0.05
LIG3-213ENST00000590630 HSPA6P17066 643 aa14.74□□□□□ -0.05
LIG3-213ENST00000590630 RRP1P56182 461 aaKnown RBP14.74□□□□□ -0.05
LIG3-213ENST00000590630 ZNF280AP59817 542 aaPredicted RBP14.74□□□□□ -0.05
LIG3-213ENST00000590630 G3BP1Q13283 466 aaKnown RBP eCLIP14.74□□□□□ -0.05
LIG3-213ENST00000590630 TDRD7Q8NHU6 1098 aaKnown RBP14.74□□□□□ -0.05
LIG3-213ENST00000590630 ZC3H15Q8WU90 426 aaKnown RBP14.74□□□□□ -0.05
LIG3-213ENST00000590630 FAM205AQ6ZU69 1335 aa14.73□□□□□ -0.05
LIG3-213ENST00000590630 POLR2AP24928 1970 aaKnown RBP14.73□□□□□ -0.05
LIG3-213ENST00000590630 SHTN1A0MZ66 631 aa14.73□□□□□ -0.05
LIG3-213ENST00000590630 FKBP1AP62942 108 aaKnown RBP14.73□□□□□ -0.05
LIG3-213ENST00000590630 OGFOD1Q8N543 542 aa14.73□□□□□ -0.05
LIG3-213ENST00000590630 AKAP2Q9Y2D5 859 aa14.73□□□□□ -0.05
LIG3-213ENST00000590630 BCAMP50895 628 aa14.72□□□□□ -0.05
LIG3-213ENST00000590630 TFCP2Q12800 502 aa14.72□□□□□ -0.05
LIG3-213ENST00000590630 SAMD7Q7Z3H4 446 aa14.72□□□□□ -0.05
LIG3-213ENST00000590630 RPAP2Q8IXW5 612 aaPredicted RBP14.72□□□□□ -0.05
LIG3-213ENST00000590630 TRPM4Q8TD43 1214 aa14.72□□□□□ -0.05
LIG3-213ENST00000590630 MXD3Q9BW11 206 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms